RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TNFSF4P23510 183 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 SLAQ13239 276 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 ZNF833PQ6ZTB9 187 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 RPRMLQ8N4K4 120 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 TSKUQ8WUA8 353 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 ZNF355PQ9NSJ1 428 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 COX7A2P2O60397 106 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 C3orf79P0CE67 100 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 NTF3P20783 257 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 CTRLP40313 264 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 PRRX1P54821 245 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 SSBP2P81877 361 aaPredicted RBP12.68□□□□□ -0.38
NUP88-207ENST00000573584 NIT1Q86X76 327 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 ZNF714Q96N38 554 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 DPRXA6NFQ7 191 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 PAXXQ9BUH6 204 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 LINC00312Q9Y6C7 94 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 TANC2Q9HCD6 1990 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 BDP1A6H8Y1 2624 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 TRAV34A0A0B4J273 112 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 REG1BP48304 166 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 C10orf113Q5VZT2 155 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 IGHV3-48P01763 117 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 REG1AP05451 166 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 NPSP0C0P6 89 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 MFAP2P55001 183 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 GAGE1Q13065 139 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 C3orf36Q3SXR2 165 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 NPIPB3Q92617 1050 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 BORCS7Q96B45 105 aa12.67□□□□□ -0.38
NUP88-207ENST00000573584 FLYWCH2Q96CP2 140 aaKnown RBP12.67□□□□□ -0.38
NUP88-207ENST00000573584 H0YJW9 148 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 C18orf32Q8TCD1 76 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 WNT10AQ9GZT5 417 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 GAL3ST2Q9H3Q3 398 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 PEX7O00628 323 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 CCL8P80075 99 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 MMDQ15546 238 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 COL5A1-AS1Q5SY13 56 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 C22orf34Q6ZV56 151 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 ZNF329Q86UD4 541 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 OR1L4Q8NGR5 311 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 FNDC4Q9H6D8 234 aaPredicted RBP12.66□□□□□ -0.38
NUP88-207ENST00000573584 ASCL3Q9NQ33 180 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 FAM215AQ9Y5M1 114 aa12.66□□□□□ -0.38
NUP88-207ENST00000573584 SMG1Q96Q15 3661 aaKnown RBP12.65□□□□□ -0.38
NUP88-207ENST00000573584 PLCE1Q9P212 2302 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 WT1-ASQ06250 92 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 TBR1Q16650 682 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 TEX36Q5VZQ5 186 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 PRR27Q6MZM9 219 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 PATE2Q6UY27 113 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 C19orf35Q6ZS72 473 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 FAM231DQ6ZW35 169 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 SPACA3Q8IXA5 215 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 NUP35Q8NFH5 326 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 NUDT10Q8NFP7 164 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 OR5AN1Q8NGI8 311 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 WIPF2Q8TF74 440 aaPredicted RBP12.65□□□□□ -0.38
NUP88-207ENST00000573584 MBD6Q96DN6 1003 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 NUDT11Q96G61 164 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 UQCR10Q9UDW1 63 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 A0A1W2PN81 502 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 CCL3L1P16619 93 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 TFPI2P48307 235 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 RASL11AQ6T310 242 aa12.65□□□□□ -0.38
NUP88-207ENST00000573584 ZNF430Q9H8G1 570 aaPredicted RBP12.65□□□□□ -0.38
NUP88-207ENST00000573584 MRPL27Q9P0M9 148 aaKnown RBP12.65□□□□□ -0.38
NUP88-207ENST00000573584 RAI1Q7Z5J4 1906 aaPredicted RBP12.65□□□□□ -0.39
NUP88-207ENST00000573584 IGLC2P0DOY2 106 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 IGLC3P0DOY3 106 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 FAM27E3Q08E93 113 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 TMEM177Q53S58 311 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 C10orf55Q5SWW7 151 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 ZADH2Q8N4Q0 377 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 GRAMD2BQ96HH9 432 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 TXN2Q99757 166 aa12.65□□□□□ -0.39
NUP88-207ENST00000573584 INS-IGF2F8WCM5 200 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 HYPMO75409 117 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 BPIFB3P59826 476 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 TCRBV4S1A1TA0A5B7 111 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 NKX6-3A6NJ46 265 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 CD40P25942 277 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 GDF5OSQ5U4N7 250 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 Q6ZN92 141 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 OR4C13Q8NGP0 309 aa12.64□□□□□ -0.39
NUP88-207ENST00000573584 SUB1P53999 127 aaKnown RBP eCLIP12.63□□□□□ -0.39
NUP88-207ENST00000573584 TNXAQ16473 311 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 RBMXL3Q8N7X1 1067 aaKnown RBP12.63□□□□□ -0.39
NUP88-207ENST00000573584 TMEM167AQ8TBQ9 72 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 FXYD5Q96DB9 178 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 IGKV1D-37A0A075B6S9 117 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 SPAARA0A1B0GVQ0 90 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 PLAUP00749 431 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 ATOH7Q8N100 152 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 OR10X1Q8NGY0 326 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 VSTM2AQ8TAG5 236 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 CLEC7AQ9BXN2 247 aa12.63□□□□□ -0.39
NUP88-207ENST00000573584 CGB1A6NKQ9 187 aa12.62□□□□□ -0.39
NUP88-207ENST00000573584 HSBP1O75506 76 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms