RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 CLDN12P56749 244 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RCN1Q15293 331 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RAB11BQ15907 218 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 C2orf76Q3KRA6 126 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 TOMM20LQ6UXN7 152 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 GSG1LQ6UXU4 331 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 ZNF705AQ6ZN79 300 aaPredicted RBP4.09□□□□□ -1.75
VPS53-208ENST00000570650 SPAG16Q8N0X2 631 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 DMBX1Q8NFW5 382 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 OR1L8Q8NGR8 309 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 SLC25A46Q96AG3 418 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 FAM3DQ96BQ1 224 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RAB40CQ96S21 281 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RAB22AQ9UL26 194 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RFNGQ9Y644 331 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 FAT1Q14517 4588 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 A0A075B6Q4 140 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 TMEM272A0A1B0GTI8 110 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 TEX50A0A1B0GTY4 177 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 I3L2K1 104 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 TNFSF12O43508 249 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 GNG7O60262 68 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 UCHL1P09936 223 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 DTYMKP23919 212 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 ST3GAL4Q11206 333 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 CATR1Q13166 79 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 MSMO1Q15800 293 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 KCTD21Q4G0X4 260 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 TTC32Q5I0X7 151 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 ZNF555Q8NEP9 628 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 OR10R2Q8NGX6 335 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 OR1P1Q8NH06 330 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 DCANP1Q8TF63 244 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 PYDC1Q8WXC3 89 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 GFI1Q99684 422 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 C9orf16Q9BUW7 83 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 HINT2Q9BX68 163 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 DCSTAMPQ9H295 470 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 PLEKHA2Q9HB19 425 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 NDUFA4L2Q9NRX3 87 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 MDFICQ9P1T7 246 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 AK6Q9Y3D8 172 aaKnown RBP4.08□□□□□ -1.76
VPS53-208ENST00000570650 PUS1Q9Y606 427 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS53-208ENST00000570650 MYCBP2O75592 4640 aa4.08□□□□□ -1.76
VPS53-208ENST00000570650 IGHV3OR16-12A0A075B7B8 117 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 RPS10-NUDT3A0A1W2PQS6 291 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 HELTA6NFD8 242 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 H3BMM0 161 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 SULT1C2O00338 296 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 MT-CO2P00403 227 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 NPPCP23582 126 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 GNRHRP30968 328 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 P2RY1P47900 373 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 EIF2B2P49770 351 aaKnown RBP4.07□□□□□ -1.76
VPS53-208ENST00000570650 ERVK-16P61578 105 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 DAD1P61803 113 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 PSMG4Q5JS54 123 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 OGFRL1Q5TC84 451 aaPredicted RBP4.07□□□□□ -1.76
VPS53-208ENST00000570650 SERTAD4-AS1Q5TG53 156 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 CNIH2Q6PI25 160 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 ZNF600Q6ZNG1 722 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 NANOGP1Q8N7R0 232 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 C17orf77Q96MU5 243 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 TMEM56Q96MV1 263 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 METTL26Q96S19 204 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 CCL28Q9NRJ3 127 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 COMMD9Q9P000 198 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 LINC00588Q9Y4M8 146 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 YTHDF2Q9Y5A9 579 aaKnown RBP4.07□□□□□ -1.76
VPS53-208ENST00000570650 TNFRSF18Q9Y5U5 241 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 UBR4Q5T4S7 5183 aa4.07□□□□□ -1.76
VPS53-208ENST00000570650 A0A1B0GU03 582 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 LOC102723971A0A1B0GUV8 181 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 CIB2O75838 187 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 SNAPC5O75971 98 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 IGHV3-48P01763 117 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 HBE1P02100 147 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 SMR3BP02814 79 aaPredicted RBP4.06□□□□□ -1.76
VPS53-208ENST00000570650 CRYBB3P26998 211 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 ALDH3B2P48448 385 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 DHRS2Q13268 280 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 RAB32Q13637 225 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 ARL6IP1Q15041 203 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 HES5Q5TA89 166 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 OR13F1Q8NGS4 319 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 SECTM1Q8WVN6 248 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 PINX1Q96BK5 328 aaKnown RBP4.06□□□□□ -1.76
VPS53-208ENST00000570650 MOB3AQ96BX8 217 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 NARS2Q96I59 477 aaKnown RBP4.06□□□□□ -1.76
VPS53-208ENST00000570650 KRTAP1-5Q9BYS1 174 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 Q9H8V8 135 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 ELF5Q9UKW6 265 aaPredicted RBP4.06□□□□□ -1.76
VPS53-208ENST00000570650 NSG2Q9Y328 171 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 OR51B2Q9Y5P1 312 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 V9GY05 133 aa4.06□□□□□ -1.76
VPS53-208ENST00000570650 A0A1W2PPQ1 181 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 METTL21EPA6NDL7 271 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 ATP8B1O43520 1251 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 ARL6IP5O75915 188 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms