RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 FKBP14Q9NWM8 211 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 ERVK-16P61578 105 aa12.54□□□□□ -0.4
CLK3-227ENST00000570296 AK6Q9Y3D8 172 aaKnown RBP12.54□□□□□ -0.4
CLK3-227ENST00000570296 GOLT1BQ9Y3E0 138 aa12.54□□□□□ -0.4
CLK3-227ENST00000570296 ERVFC1-1P60608 527 aa12.53□□□□□ -0.4
CLK3-227ENST00000570296 Q6ZRN7 208 aaPredicted RBP12.53□□□□□ -0.4
CLK3-227ENST00000570296 MND1Q9BWT6 205 aa12.53□□□□□ -0.4
CLK3-227ENST00000570296 CCL28Q9NRJ3 127 aa12.53□□□□□ -0.4
CLK3-227ENST00000570296 MARCH11A6NNE9 402 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 FAM90A26D6RGX4 464 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 AP2S1P53680 142 aaPredicted RBP12.52□□□□□ -0.41
CLK3-227ENST00000570296 GABARAPL2P60520 117 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 ARL6IP1Q15041 203 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 RRN3P1Q2M238 152 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 CADM3Q8N126 398 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 ZNF114Q8NC26 417 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 SECTM1Q8WVN6 248 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 UPK3BQ9BT76 320 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 DUSP21Q9H596 190 aa12.52□□□□□ -0.41
CLK3-227ENST00000570296 LYRM9A8MSI8 78 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 F5H768 121 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 SNAPC5O75971 98 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 PRSS48Q7RTY5 328 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 NANOGP1Q8N7R0 232 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 RNF141Q8WVD5 230 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 PINX1Q96BK5 328 aaKnown RBP12.51□□□□□ -0.41
CLK3-227ENST00000570296 FKBP11Q9NYL4 201 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 PRNDQ9UKY0 176 aa12.51□□□□□ -0.41
CLK3-227ENST00000570296 FXYD7P58549 80 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 LINC00315P59091 139 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 ARPC4P59998 168 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 TPRA1Q86W33 373 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 CLUHP3Q96NS8 147 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 C7orf50Q9BRJ6 194 aaKnown RBP12.5□□□□□ -0.41
CLK3-227ENST00000570296 ZNF586Q9NXT0 402 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 ELF5Q9UKW6 265 aaPredicted RBP12.5□□□□□ -0.41
CLK3-227ENST00000570296 NSG2Q9Y328 171 aa12.5□□□□□ -0.41
CLK3-227ENST00000570296 TMEM50AO95807 157 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 RAB6AP20340 208 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 NKX2-1P43699 371 aaPredicted RBP12.49□□□□□ -0.41
CLK3-227ENST00000570296 C1orf158Q8N1D5 194 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 ZNF709Q8N972 641 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 OR13F1Q8NGS4 319 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 OR51H1Q8NH63 302 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 ANXA10Q9UJ72 324 aa12.49□□□□□ -0.41
CLK3-227ENST00000570296 METTL21EPA6NDL7 271 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 TNFAIP8O95379 198 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 PPP5CP53041 499 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 SPHARQ15513 63 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 RNASE12Q5GAN4 147 aaKnown RBP12.48□□□□□ -0.41
CLK3-227ENST00000570296 GLMPQ8WWB7 406 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 U3KQE9 123 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 V9GY05 133 aa12.48□□□□□ -0.41
CLK3-227ENST00000570296 FAT3Q8TDW7 4589 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 ARL6IP5O75915 188 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 IGKV3-20P01619 116 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 ATP5G1P05496 136 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 ATP5G3P48201 142 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 TMEM69Q5SWH9 247 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 HES5Q5TA89 166 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 GDF5OSQ5U4N7 250 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 AADACL3Q5VUY0 350 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 HACD4Q5VWC8 232 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 C16orf54Q6UWD8 224 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 DEFB104AQ8WTQ1 72 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 NRN1Q9NPD7 142 aa12.47□□□□□ -0.41
CLK3-227ENST00000570296 HSMCR30P0CW71 290 aa12.46□□□□□ -0.41
CLK3-227ENST00000570296 DEFB130BP0DP73 79 aa12.46□□□□□ -0.41
CLK3-227ENST00000570296 DEFB130AP0DP74 79 aa12.46□□□□□ -0.41
CLK3-227ENST00000570296 GCSHP23434 173 aa12.46□□□□□ -0.41
CLK3-227ENST00000570296 TBCEQ15813 527 aaPredicted RBP12.46□□□□□ -0.41
CLK3-227ENST00000570296 SLC5A7Q9GZV3 580 aa12.46□□□□□ -0.41
CLK3-227ENST00000570296 DBX1A6NMT0 343 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 KRASP01116 189 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 PPYP01298 95 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 FCGR2CP31995 323 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 HAMPP81172 84 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 CDNFQ49AH0 187 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 TMEM91Q6ZNR0 172 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 FCGR1BQ92637 280 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 UFD1Q92890 307 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 TMEM230Q96A57 120 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 TSC22D3Q99576 134 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 MAGT1Q9H0U3 335 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 SAV1Q9H4B6 383 aaPredicted RBP12.45□□□□□ -0.42
CLK3-227ENST00000570296 VCX3AQ9NNX9 186 aa12.45□□□□□ -0.42
CLK3-227ENST00000570296 SCGB2A1O75556 95 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 PLA2G1BP04054 148 aaKnown RBP12.44□□□□□ -0.42
CLK3-227ENST00000570296 FOXI2Q6ZQN5 318 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 ZNF818PQ6ZRF7 136 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 SPARTQ8N0X7 666 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 NUDCD2Q8WVJ2 157 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 TMEM70Q9BUB7 260 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 SLC35B3Q9H1N7 401 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 FNDC4Q9H6D8 234 aaPredicted RBP12.44□□□□□ -0.42
CLK3-227ENST00000570296 ACOT13Q9NPJ3 140 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 LSM2Q9Y333 95 aaKnown RBP12.44□□□□□ -0.42
CLK3-227ENST00000570296 MRPS16Q9Y3D3 137 aaKnown RBP12.44□□□□□ -0.42
CLK3-227ENST00000570296 DNAH8Q96JB1 4490 aa12.44□□□□□ -0.42
CLK3-227ENST00000570296 A0A087WXM4 84 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms