RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SOHLH1Q5JUK2 328 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 C10orf113Q5VZT2 155 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF660Q6AZW8 331 aaPredicted RBP4.37□□□□□ -1.71
VPS13C-209ENST00000560637 C9orf62Q8N4C0 152 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 OR4F17Q8NGA8 305 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 OR5AU1Q8NGC0 362 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 OR51G1Q8NGK1 321 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 FAM110DQ8TAY7 271 aaPredicted RBP4.37□□□□□ -1.71
VPS13C-209ENST00000560637 DAZAP1Q96EP5 407 aaKnown RBP4.37□□□□□ -1.71
VPS13C-209ENST00000560637 AGMATQ9BSE5 352 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 GON7Q9BXV9 100 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TMPRSS5Q9H3S3 457 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 CELSR2Q9HCU4 2923 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 A0A1W2PPI3 338 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TAAR5O14804 337 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 CSN1S1P47710 185 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 MINOS1Q5TGZ0 78 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF841Q6ZN19 808 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 RBPMS2Q6ZRY4 209 aaKnown RBP4.37□□□□□ -1.71
VPS13C-209ENST00000560637 SCARB1Q8WTV0 552 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 GLMPQ8WWB7 406 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 FRZBQ92765 325 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 CXorf58Q96LI9 332 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 SLA2Q9H6Q3 261 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 KCNIP2Q9NS61 270 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 MINOS1-NBL1R4GNA1 71 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 ZANQ9Y493 2812 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TRAV14DV4A0A0A6YYC5 116 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 PPP5D1E7EU14 171 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 HYPMO75409 117 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 CD33P20138 364 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 ARL3P36405 182 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 RND3P61587 244 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TMEM30BQ3MIR4 351 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 IGFL4Q6B9Z1 124 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 PSMG3-AS1Q96PY0 264 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 LYRM2Q9NU23 88 aaPredicted RBP4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TMEM56-RWDD3S4R434 201 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TRBV6-6A0A0A6YYG2 114 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 LINC01548A6NM66 108 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 FOXI3A8MTJ6 420 aaPredicted RBP4.36□□□□□ -1.71
VPS13C-209ENST00000560637 PAGE4O60829 102 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 IGHV4-31P0DP07 118 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 RPL15P61313 204 aaKnown RBP4.36□□□□□ -1.71
VPS13C-209ENST00000560637 RELBQ01201 579 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 FLI1Q01543 452 aaPredicted RBP4.36□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF90Q03938 601 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TEX261Q6UWH6 196 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 C1orf229Q6ZS94 237 aaPredicted RBP4.36□□□□□ -1.71
VPS13C-209ENST00000560637 S100A7AQ86SG5 101 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TEX29Q8N6K0 151 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TCTEX1D1Q8N7M0 179 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 NHLRC2Q8NBF2 726 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 TNFRSF14Q92956 283 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF727A8MUV8 499 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 LY6G6DO95868 133 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 HBE1P02100 147 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 PAX1P15863 534 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 STPG3Q8N7X2 389 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 Q8NFD4 153 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 EEF1AKMT3Q96AZ1 226 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 C5orf30Q96GV9 206 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 RNF126Q9BV68 326 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 AAMDCQ9H7C9 122 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 HIGD1AQ9Y241 93 aa4.36□□□□□ -1.71
VPS13C-209ENST00000560637 DUXBA0A1W2PPF3 345 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 MFSD2BA6NFX1 497 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 PROP1O75360 226 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 B3GALNT1O75752 331 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 IL6RP08887 468 aaPredicted RBP4.35□□□□□ -1.71
VPS13C-209ENST00000560637 SYNJ2BPP57105 145 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 FAM106AQ4KMX7 169 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 Q6ZSR3 168 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 ASCL2Q99929 193 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 DCHS2Q6V1P9 2916 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 NBEAL1Q6ZS30 2694 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 OVOL3O00110 214 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 SCO1O75880 301 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 TMEM50AO95807 157 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 FAM157CP0CG43 387 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 PRCDQ00LT1 54 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 PEA15Q15121 130 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 NMSQ5H8A3 153 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 TEX45Q8NA69 505 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 IL22RA2Q969J5 263 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 RAB24Q969Q5 203 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 GRAMD2BQ96HH9 432 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 C16orf92Q96LL3 132 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 METTL26Q96S19 204 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 SMIM7Q9BQ49 75 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 HSPB9Q9BQS6 159 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 RPRMQ9NS64 109 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 CDC42EP3Q9UKI2 254 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 COL27A1Q8IZC6 1860 aaPredicted RBP4.35□□□□□ -1.71
VPS13C-209ENST00000560637 TRAV5A0A0B4J249 113 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 NDUFB8O95169 186 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 NPPCP23582 126 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 GATA3P23771 443 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 AKR1D1P51857 326 aa4.35□□□□□ -1.71
VPS13C-209ENST00000560637 WT1-ASQ06250 92 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms