RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 RASL11BQ9BPW5 248 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 PGPEP1Q9NXJ5 209 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 JPT1Q9UK76 154 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 OBSL1O75147 1896 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 ZNF146Q15072 292 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 EFNB3Q15768 340 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 TMEM170BQ5T4T1 132 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 PEAR1Q5VY43 1037 aaPredicted RBP5.93□□□□□ -1.46
USP3-210ENST00000559192 TREML4Q6UXN2 200 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 TMEM14EPQ6UXP3 125 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 OR5AN1Q8NGI8 311 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 MGST2Q99735 147 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 ST20Q9HBF5 79 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 SPANXA1Q9NS26 97 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 SEC16AO15027 2179 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 IZUMO1RA6ND01 250 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 IGKV1D-33P01593 117 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 IGKV1-33P01594 117 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 SRSF7Q16629 238 aaKnown RBP eCLIP5.93□□□□□ -1.46
USP3-210ENST00000559192 LYPD6Q86Y78 171 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 SRSF12Q8WXF0 261 aaKnown RBP5.93□□□□□ -1.46
USP3-210ENST00000559192 TMEM101Q96IK0 257 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 PRELID3AQ96N28 172 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 CRIM1Q9NZV1 1036 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 KNTC1P50748 2209 aa5.93□□□□□ -1.46
USP3-210ENST00000559192 LTBRP36941 435 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 CACNG7P62955 275 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 FOXL1Q12952 345 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 RSPO1Q2MKA7 263 aaPredicted RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 BOD1L2Q8IYS8 172 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 MRAPQ8TCY5 172 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 SEPSECSQ9HD40 501 aaKnown RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 PHF3Q92576 2039 aaKnown RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 A0A0G2JLM5 398 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 ITGB1BP1O14713 200 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 APOHP02749 345 aaPredicted RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 TNFRSF1AP19438 455 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 PSG7Q13046 419 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 TBR1Q16650 682 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 LINC00305Q7Z4B0 112 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 VSTM2AQ8TAG5 236 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 HIGD1AQ9Y241 93 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 TRAV9-1A0A075B6T8 112 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 TRAV3A0A0B4J244 114 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 DLX6P56179 175 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 RPL8P62917 257 aaKnown RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 LCN12Q6JVE5 192 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 NPIPB3Q92617 1050 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 GNB1LQ9BYB4 327 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 NPIPB6E9PJ23 425 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 LHX2P50458 406 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 ZNF585BQ52M93 769 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 PSMG4Q5JS54 123 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 PMS2CLQ68D20 193 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 FAM53AQ6NSI3 398 aaPredicted RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 HAPLN4Q86UW8 402 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 SLC25A10Q9UBX3 287 aaPredicted RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 NUP210Q8TEM1 1887 aaPredicted RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 TICRRQ7Z2Z1 1910 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 HOXA3O43365 443 aaPredicted RBP5.92□□□□□ -1.46
USP3-210ENST00000559192 HYPMO75409 117 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 IGKV1-39P01597 117 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 IGKV1D-39P04432 117 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 OR10J3Q5JRS4 329 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 FAM214BQ7L5A3 538 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 ATP6V0BQ99437 205 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 CST9LQ9H4G1 147 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 IDI2-AS1Q9NZ38 188 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 WDR83OSQ9Y284 106 aa5.92□□□□□ -1.46
USP3-210ENST00000559192 UTRNP46939 3433 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 MED12Q93074 2177 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 RALGAPA1Q6GYQ0 2036 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 HIGD1CA8MV81 97 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 TNFRSF6BO95407 300 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PYYP10082 97 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 CCL8P80075 99 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 C1orf122Q6ZSJ8 110 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 FOXL2NBQ6ZUU3 175 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 Q6ZWC4 215 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PNKDQ8N490 385 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 C1orf43Q9BWL3 253 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 MOB4Q9Y3A3 225 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 LINC00473A8K010 186 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PEX7O00628 323 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PSPNO60542 156 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 MYOD1P15172 320 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 HSD52Q0P140 79 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 ASPHD1Q5U4P2 390 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 C17orf82Q86X59 251 aaPredicted RBP5.91□□□□□ -1.46
USP3-210ENST00000559192 GCSAMQ8N6F7 178 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 ZNF114Q8NC26 417 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 GGTLC1Q9BX51 225 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PILRBQ9UKJ0 227 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 MFAP4P55083 255 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 GP6Q9HCN6 339 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 TNFRSF19Q9NS68 423 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 LOC105371242A0A075B767 164 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PPIAL4CA0A0B4J2A2 164 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 PPIAL4GP0DN37 164 aa5.91□□□□□ -1.46
USP3-210ENST00000559192 HIST1H4AP62805 103 aaKnown RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms