RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 REG4Q9BYZ8 158 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 PARP12Q9H0J9 701 aaKnown RBP4.08□□□□□ -1.76
LDLR-209ENST00000558528 ZNF257Q9Y2Q1 563 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 WSB1Q9Y6I7 421 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 HRNRQ86YZ3 2850 aaPredicted RBP4.08□□□□□ -1.76
LDLR-209ENST00000558528 IGLV5-52A0A0A0MRZ9 124 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 BORCS7-ASMTA0A0B4J1R7 106 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 IGHV1-3A0A0C4DH29 117 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 A0A1W2PPE3 182 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 MEX3AA1L020 520 aaKnown RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 ODF3BA8MYP8 253 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 INAFM1C9JVW0 142 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 H0YJW9 148 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 LY6LH3BQJ8 138 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 ARPC5O15511 151 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 CYB5BO43169 146 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 SYNGR2O43760 224 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 CHST1O43916 411 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 FCN3O75636 299 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 DFFBO76075 338 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 KBTBD11O94819 623 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 S1PR2O95136 353 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 LY6G6DO95868 133 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 IFNA17P01571 189 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 IGHV3-7P01780 117 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 RPL12P30050 165 aaKnown RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 S100A11P31949 105 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 G6PCP35575 357 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 HOXA1P49639 335 aaPredicted RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 SUB1P53999 127 aaKnown RBP eCLIP4.07□□□□□ -1.76
LDLR-209ENST00000558528 UBE2KP61086 200 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 HSPE1P61604 102 aaKnown RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 RAB11AP62491 216 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 HBG1P69891 147 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 HBG2P69892 147 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 RPL24P83731 157 aaKnown RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 ERHP84090 104 aaKnown RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 RELQ04864 619 aaPredicted RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 KLF5Q13887 457 aaPredicted RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 ZNF266Q14584 549 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 AANATQ16613 207 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 ATP6V1FQ16864 119 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 LRRC37A5PQ49AS3 106 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 TPTE2P1Q5T6R2 138 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 Q6ZRG5 221 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 SLC51BQ86UW2 128 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 STX12Q86Y82 276 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 KCNRGQ8N5I3 272 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 ZNF383Q8NA42 475 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 OR4P4Q8NGL7 312 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 OR2T10Q8NGZ9 312 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 OR5B3Q8NH48 314 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 GRPEL2Q8TAA5 225 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 LHFPL5Q8TAF8 219 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 TMEM158Q8WZ71 300 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 LEAP2Q969E1 77 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 SMIM8Q96KF7 97 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 AQP10Q96PS8 301 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 COMMD5Q9GZQ3 224 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 SIRT7Q9NRC8 400 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 C11orf21Q9P2W6 132 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 CACNG5Q9UF02 275 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 NUP50Q9UKX7 468 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 TNFSF18Q9UNG2 199 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 LSM5Q9Y4Y9 91 aaKnown RBP4.07□□□□□ -1.76
LDLR-209ENST00000558528 HSPB11Q9Y547 144 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 U3KQ87 197 aa4.07□□□□□ -1.76
LDLR-209ENST00000558528 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.06□□□□□ -1.761e-6■■□□□ 11.9
LDLR-209ENST00000558528 HCFC1P51610 2035 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 TRAV14DV4A0A0A6YYC5 116 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 IGHV1-69DA0A0B4J2H0 117 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 FBLL1A6NHQ2 334 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 CEBPZOSA8MTT3 80 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 UPK2O00526 184 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 NPFFO15130 113 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 ATP6V0E1O15342 81 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 SOX15O60248 233 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 RAMP3O60896 148 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 MOSP00540 346 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 IFNA7P01567 189 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 IGKV1-39P01597 117 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 IGKV1-5P01602 117 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 IGHV1-69P01742 117 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 IGKV1D-39P04432 117 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 P0C879 139 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 BMI1P35226 326 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 DYNLT3P51808 116 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 SEC61GP60059 68 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 RAB14P61106 215 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 UBA52P62987 128 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 TNFRSF9Q07011 255 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 EBI3Q14213 229 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 LGALSLQ3ZCW2 172 aaPredicted RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 OR2B11Q5JQS5 317 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 TMUB2Q71RG4 321 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 ZNF767PQ75MW2 155 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 PUSL1Q8N0Z8 303 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 ZNF114Q8NC26 417 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 OR1L6Q8NGR2 347 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 OR1L8Q8NGR8 309 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms