RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	LINC00312	Q9Y6C7	94 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	IGKV1-16	P04430	117 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	NTF3	P20783	257 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	TSPO	P30536	169 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	GNG10	P50151	68 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	DMRTA1	Q5VZB9	504 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	THAP8	Q8NA92	274 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	NUP35	Q8NFH5	326 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	CLEC7A	Q9BXN2	247 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	GAL3ST2	Q9H3Q3	398 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	C1RL	Q9NZP8	487 aa		13.21	□□□□□ -0.29
SHMT2-231	ENST00000557433	IGHV2-26	A0A0B4J1V2	119 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	TCRBV4S1A1T	A0A5B7	111 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	FAM181B	A6NEQ2	426 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	MEF2C	Q06413	473 aa	Predicted RBP	13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	CT83	Q5H943	113 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	NUDT10	Q8NFP7	164 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	TMEM167A	Q8TBQ9	72 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	TMEM190	Q8WZ59	177 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	NUDT11	Q96G61	164 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	ALKBH7	Q9BT30	221 aa	Predicted RBP	13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433	ZNF355P	Q9NSJ1	428 aa		13.21	□□□□□ -0.3
SHMT2-231	ENST00000557433		M0R1B8	84 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	UBE2G1	P62253	170 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	TNFAIP6	P98066	277 aa	Predicted RBP	13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	SPRN	Q5BIV9	151 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	TEX36	Q5VZQ5	186 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	FAM19A2	Q8N3H0	131 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	STPG4	Q8N801	248 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	OR2D3	Q8NGH3	330 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	OR5AN1	Q8NGI8	311 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	SNRNP40	Q96DI7	357 aa	Known RBP	13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	HARBI1	Q96MB7	349 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433	PRUNE2	Q8WUY3	3088 aa		13.2	□□□□□ -0.3
SHMT2-231	ENST00000557433		A0A1B0GXF2	115 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433		M0R2Z0	102 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	CDX4	O14627	284 aa	Predicted RBP	13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	MYCNOS	P40205	109 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	TNXA	Q16473	311 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	TNFRSF19	Q9NS68	423 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	KLF12	Q9Y4X4	402 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	NKX6-3	A6NJ46	265 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433		H0YJW9	148 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	TFPI2	P48307	235 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	CCL11	P51671	97 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	ETFRF1	Q6IPR1	90 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	PDPN	Q86YL7	162 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	DEFB123	Q8N688	67 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	FDCSP	Q8NFU4	85 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	FAM168A	Q92567	244 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	C7orf69	Q9H7B7	122 aa		13.19	□□□□□ -0.3
SHMT2-231	ENST00000557433	TRAV5	A0A0B4J249	113 aa		13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	TOMM40	O96008	361 aa		13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	C8orf31	Q8N9H6	132 aa		13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	FLYWCH2	Q96CP2	140 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	FXYD5	Q96DB9	178 aa		13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	SSBP3	Q9BWW4	388 aa	Predicted RBP	13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	WNT10A	Q9GZT5	417 aa		13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	DSCAML1	Q8TD84	2053 aa		13.18	□□□□□ -0.3
SHMT2-231	ENST00000557433	NDUFB8	O95169	186 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	CA1	P00915	261 aa	Predicted RBP	13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	COL8A2	P25067	703 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	MLANA	Q16655	118 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	ZNF738	Q8NE65	137 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	OR10W1	Q8NGF6	305 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	OR4C13	Q8NGP0	309 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	OR2T6	Q8NHC8	308 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	CHCHD1	Q96BP2	118 aa	Known RBP	13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	PERP	Q96FX8	193 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	TANC2	Q9HCD6	1990 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	ZNF492	Q9P255	531 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	EPDR1	Q9UM22	224 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	IGHV1-69-2	A0A0G2JMI3	117 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	HIGD1C	A8MV81	97 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	CRX	O43186	299 aa	Predicted RBP	13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	IGHV1-46	P01743	117 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	HBB	P68871	147 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	FAM201A	Q5SY85	155 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	MORN5	Q5VZ52	161 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	NHLRC2	Q8NBF2	726 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	ZNF596	Q8TC21	504 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	GPR82	Q96P67	336 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	CCL13	Q99616	98 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	MRPL20	Q9BYC9	149 aa	Known RBP	13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	GFRA4	Q9GZZ7	299 aa		13.17	□□□□□ -0.3
SHMT2-231	ENST00000557433	FAM231B	A6NCW3	169 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	C2orf70	A6NJV1	201 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433		A8MWL6	223 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	TCF21	O43680	179 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	FSTL3	O95633	263 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	SP9	P0CG40	484 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	REG1B	P48304	166 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	GDF5OS	Q5U4N7	250 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	ZCCHC24	Q8N2G6	241 aa	Known RBP	13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	RBMXL3	Q8N7X1	1067 aa	Known RBP	13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	TMEM70	Q9BUB7	260 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	ST20	Q9HBF5	79 aa		13.16	□□□□□ -0.3
SHMT2-231	ENST00000557433	WDFY3	Q8IZQ1	3526 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	PYY	P10082	97 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	EBLN2	Q6P2I7	272 aa		13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms