RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SPINK9Q5DT21 86 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 Q5VSD8 79 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 TPRA1Q86W33 373 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 HOGA1Q86XE5 327 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 C10orf67Q8IYJ2 551 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 PACRGLQ8N7B6 248 aa9.06□□□□□ -0.96
VPS29-211ENST00000553128 SMIM9A6NGZ8 99 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 FAM90A26D6RGX4 464 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 XGP55808 180 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 OXA1LQ15070 435 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 MLANAQ16655 118 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 CADM3Q8N126 398 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 LYPD1Q8N2G4 141 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 MGLLQ99685 303 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 FKBP11Q9NYL4 201 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 LINC00588Q9Y4M8 146 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 YTHDF2Q9Y5A9 579 aaKnown RBP9.05□□□□□ -0.96
VPS29-211ENST00000553128 U3KQE9 123 aa9.05□□□□□ -0.96
VPS29-211ENST00000553128 CASQ2O14958 399 aaPredicted RBP9.04□□□□□ -0.96
VPS29-211ENST00000553128 HLA-DRB4P13762 266 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 DAD1P61803 113 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 PRCDQ00LT1 54 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 ZNF709Q8N972 641 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 C15orf53Q8NAA6 179 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 GLMPQ8WWB7 406 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 FNDC4Q9H6D8 234 aaPredicted RBP9.04□□□□□ -0.96
VPS29-211ENST00000553128 HLA-DRB4X5D2U9 266 aa9.04□□□□□ -0.96
VPS29-211ENST00000553128 TEX48A0A1B0GUV7 120 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 LOC102723971A0A1B0GUV8 181 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 IGKV1-39P01597 117 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 IGKV1D-39P04432 117 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 MYL9P24844 172 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 DLK1P80370 383 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 TIGITQ495A1 244 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 OGFRL1Q5TC84 451 aaPredicted RBP9.03□□□□□ -0.96
VPS29-211ENST00000553128 C16orf54Q6UWD8 224 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 GSG1LQ6UXU4 331 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 C1orf158Q8N1D5 194 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 LGALS14Q8TCE9 139 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 C18orf15Q96N68 181 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 CCDC90BQ9GZT6 254 aa9.03□□□□□ -0.96
VPS29-211ENST00000553128 RPS10-NUDT3A0A1W2PQS6 291 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 MEIS3P1A6NDR6 274 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 CLN5O75503 358 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 NUDT3O95989 172 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 IGKV1-17P01599 117 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 PRM2P04554 102 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 HERV-K104P61576 105 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 IZUMO4Q1ZYL8 232 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 KCTD21Q4G0X4 260 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 C22orf42Q6IC83 251 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 TSPAN14Q8NG11 270 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 TMEM230Q96A57 120 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 SEC22AQ96IW7 307 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 TSC22D3Q99576 134 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 SLC35B3Q9H1N7 401 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 DUSP21Q9H596 190 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 C8orf4Q9NR00 106 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 SCN3BQ9NY72 215 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 MDFICQ9P1T7 246 aa9.02□□□□□ -0.97
VPS29-211ENST00000553128 TRAV18A0A075B6X5 111 aa9.01□□□□□ -0.97
VPS29-211ENST00000553128 HSPE1P61604 102 aaKnown RBP9.01□□□□□ -0.97
VPS29-211ENST00000553128 SNRPD3P62318 126 aaKnown RBP9.01□□□□□ -0.97
VPS29-211ENST00000553128 ERHP84090 104 aaKnown RBP9.01□□□□□ -0.97
VPS29-211ENST00000553128 OR5AP2Q8NGF4 316 aa9.01□□□□□ -0.97
VPS29-211ENST00000553128 OR4A16Q8NH70 328 aa9.01□□□□□ -0.97
VPS29-211ENST00000553128 FXYD6Q9H0Q3 95 aa9.01□□□□□ -0.97
VPS29-211ENST00000553128 DAPK2Q9UIK4 370 aa9.01□□□□□ -0.97
VPS29-211ENST00000553128 RGS10O43665 173 aa9□□□□□ -0.97
VPS29-211ENST00000553128 RFX2P48378 723 aa9□□□□□ -0.97
VPS29-211ENST00000553128 OR5H6Q8NGV6 325 aa9□□□□□ -0.97
VPS29-211ENST00000553128 SLC25A38Q96DW6 304 aa9□□□□□ -0.97
VPS29-211ENST00000553128 NARS2Q96I59 477 aaKnown RBP9□□□□□ -0.97
VPS29-211ENST00000553128 ZNF2Q9BSG1 426 aaPredicted RBP9□□□□□ -0.97
VPS29-211ENST00000553128 NRN1Q9NPD7 142 aa9□□□□□ -0.97
VPS29-211ENST00000553128 RHBDL2Q9NX52 303 aa9□□□□□ -0.97
VPS29-211ENST00000553128 EHFQ9NZC4 300 aa9□□□□□ -0.97
VPS29-211ENST00000553128 TRDV1A0A1B0GX56 115 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 NOTOA8MTQ0 251 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 SCGNO76038 276 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 HBE1P02100 147 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 HNRNPCP07910 306 aaKnown RBP eCLIP8.99□□□□□ -0.97
VPS29-211ENST00000553128 RNASE2P10153 161 aaKnown RBP8.99□□□□□ -0.97
VPS29-211ENST00000553128 BTF3P20290 206 aaKnown RBP8.99□□□□□ -0.97
VPS29-211ENST00000553128 NKX2-1P43699 371 aaPredicted RBP8.99□□□□□ -0.97
VPS29-211ENST00000553128 EIF2B2P49770 351 aaKnown RBP8.99□□□□□ -0.97
VPS29-211ENST00000553128 USF2Q15853 346 aaPredicted RBP8.99□□□□□ -0.97
VPS29-211ENST00000553128 PHLDA2Q53GA4 152 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 DHRS11Q6UWP2 260 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 SSX7Q7RTT5 188 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 H2BFWTQ7Z2G1 175 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 OR4X1Q8NH49 305 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 MRGPRFQ96AM1 343 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 Q9H8V8 135 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 NDUFB11Q9NX14 153 aa8.99□□□□□ -0.97
VPS29-211ENST00000553128 F5H768 121 aa8.98□□□□□ -0.97
VPS29-211ENST00000553128 SMR3BP02814 79 aaPredicted RBP8.98□□□□□ -0.97
VPS29-211ENST00000553128 SNCAP37840 140 aa8.98□□□□□ -0.97
VPS29-211ENST00000553128 AP2S1P53680 142 aaPredicted RBP8.98□□□□□ -0.97
VPS29-211ENST00000553128 CCL18P55774 89 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms