RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CDK2AP2O75956 126 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 TMEM50AO95807 157 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 CRYBB3P26998 211 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 AQP4P55087 323 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 TAS2R46P59540 309 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 DHRS2Q13268 280 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 LPCAT3Q6P1A2 487 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 OR6F1Q8NGZ6 308 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 RAB40CQ96S21 281 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 RNF167Q9H6Y7 350 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 DYNC1H1Q14204 4646 aaKnown RBP12.13□□□□□ -0.47
VPS29-204ENST00000548259 PSMG4Q5JS54 123 aa12.13□□□□□ -0.47
VPS29-204ENST00000548259 MAPKAPK5-AS1Q8N8E1 139 aa12.13□□□□□ -0.47
VPS29-204ENST00000548259 OR5H2Q8NGV7 314 aa12.13□□□□□ -0.47
VPS29-204ENST00000548259 DCANP1Q8TF63 244 aa12.13□□□□□ -0.47
VPS29-204ENST00000548259 A0A1B0GU03 582 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 SMIM9A6NGZ8 99 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 RFX2P48378 723 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 IDNKQ5T6J7 187 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 SLC25A38Q96DW6 304 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 PDCD10Q9BUL8 212 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 XCL2Q9UBD3 114 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 PKD1P98161 4303 aa12.12□□□□□ -0.47
VPS29-204ENST00000548259 MEIS3P1A6NDR6 274 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 PSMB9P28065 219 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 EMP1P54849 157 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 FAM3BP58499 235 aaPredicted RBP12.11□□□□□ -0.47
VPS29-204ENST00000548259 SLC35G3Q8N808 338 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 SEC22AQ96IW7 307 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 NEU1Q99519 415 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 TMED3Q9Y3Q3 217 aa12.11□□□□□ -0.47
VPS29-204ENST00000548259 TRAV30A0A087WSZ9 112 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 CLN5O75503 358 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 PMP2P02689 132 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 SDC2P34741 201 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 MXD1Q05195 221 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 PHLDA2Q53GA4 152 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 OR5H6Q8NGV6 325 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 SCRT1Q9BWW7 348 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 SEPSECSQ9HD40 501 aaKnown RBP12.1□□□□□ -0.47
VPS29-204ENST00000548259 ENY2Q9NPA8 101 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 RFNGQ9Y644 331 aa12.1□□□□□ -0.47
VPS29-204ENST00000548259 TMEM127O75204 238 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 ATG12O94817 140 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 OPRK1P41145 380 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 HSPA13P48723 471 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 HOXA1P49639 335 aaPredicted RBP12.09□□□□□ -0.47
VPS29-204ENST00000548259 OR4X1Q8NH49 305 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 FCGR1BQ92637 280 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 MRGPRFQ96AM1 343 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 S100A16Q96FQ6 103 aaKnown RBP12.09□□□□□ -0.47
VPS29-204ENST00000548259 NIPSNAP3BQ9BS92 247 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 VCX3BQ9H321 246 aa12.09□□□□□ -0.47
VPS29-204ENST00000548259 INS-IGF2F8WCM5 200 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 PPP5CP53041 499 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 TSPAN5P62079 268 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 TBC1D26Q86UD7 250 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 Q8WTZ3 238 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 CNBD2Q96M20 576 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 FXYD6Q9H0Q3 95 aa12.08□□□□□ -0.48
VPS29-204ENST00000548259 RPS10-NUDT3A0A1W2PQS6 291 aa12.07□□□□□ -0.48
VPS29-204ENST00000548259 H3BMM0 161 aa12.07□□□□□ -0.48
VPS29-204ENST00000548259 HNRNPCP07910 306 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS29-204ENST00000548259 HTN3P15516 51 aa12.07□□□□□ -0.48
VPS29-204ENST00000548259 SPINK9Q5DT21 86 aa12.07□□□□□ -0.48
VPS29-204ENST00000548259 ZNF705AQ6ZN79 300 aaPredicted RBP12.07□□□□□ -0.48
VPS29-204ENST00000548259 ATG101Q9BSB4 218 aa12.07□□□□□ -0.48
VPS29-204ENST00000548259 IGHV3OR16-12A0A075B7B8 117 aa12.06□□□□□ -0.48
VPS29-204ENST00000548259 ZNF705FA8MVS1 300 aaPredicted RBP12.06□□□□□ -0.48
VPS29-204ENST00000548259 FAM90A26D6RGX4 464 aa12.06□□□□□ -0.48
VPS29-204ENST00000548259 GSTZ1O43708 216 aaPredicted RBP12.06□□□□□ -0.48
VPS29-204ENST00000548259 ZNF705DP0CH99 300 aaPredicted RBP12.06□□□□□ -0.48
VPS29-204ENST00000548259 ZNF705BP0CI00 300 aaPredicted RBP12.06□□□□□ -0.48
VPS29-204ENST00000548259 RPL5P46777 297 aaKnown RBP12.06□□□□□ -0.48
VPS29-204ENST00000548259 GABARAPL2P60520 117 aa12.06□□□□□ -0.48
VPS29-204ENST00000548259 C16orf54Q6UWD8 224 aa12.06□□□□□ -0.48
VPS29-204ENST00000548259 NRN1Q9NPD7 142 aa12.06□□□□□ -0.48
VPS29-204ENST00000548259 HLA-DRB4P13762 266 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 NAT1P18440 290 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 HRH1P35367 487 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 AKR1C2P52895 323 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 OXA1LQ15070 435 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 TMEM69Q5SWH9 247 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 C15orf53Q8NAA6 179 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 GLMPQ8WWB7 406 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 DKK2Q9UBU2 259 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 ANAPC10Q9UM13 185 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 HLA-DRB4X5D2U9 266 aa12.05□□□□□ -0.48
VPS29-204ENST00000548259 AGRNO00468 2067 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 RNASE2P10153 161 aaKnown RBP12.04□□□□□ -0.48
VPS29-204ENST00000548259 PRSS3P35030 304 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 NKX2-1P43699 371 aaPredicted RBP12.04□□□□□ -0.48
VPS29-204ENST00000548259 TAS2R20P59543 309 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 TIGITQ495A1 244 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 FAM222AQ5U5X8 452 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 CROCCP3Q8IVE0 287 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 Q8N1X5 172 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 OR1S2Q8NGQ3 325 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 PFDN2Q9UHV9 154 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 GOLT1BQ9Y3E0 138 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms