RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RABAC1Q9UI14 185 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 CLN5O75503 358 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 RNASE2P10153 161 aaKnown RBP9.81□□□□□ -0.84
SS18-204ENST00000539244 SNCAP37840 140 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 RPS19P39019 145 aaKnown RBP9.81□□□□□ -0.84
SS18-204ENST00000539244 RND3P61587 244 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 IZUMO4Q1ZYL8 232 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 KCTD21Q4G0X4 260 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 CSNK1G2-AS1Q8NCQ2 148 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 OR4X1Q8NH49 305 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 METTL26Q96S19 204 aa9.81□□□□□ -0.84
SS18-204ENST00000539244 A0A0B4J293 547 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 IGKV1-5P01602 117 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 AMBPP02760 352 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 P2RY1P47900 373 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 SUB1P53999 127 aaKnown RBP eCLIP9.8□□□□□ -0.84
SS18-204ENST00000539244 SPINK9Q5DT21 86 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 SLC35G3Q8N808 338 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 STXBP6Q8NFX7 210 aa9.8□□□□□ -0.84
SS18-204ENST00000539244 ZNF486Q96H40 463 aaPredicted RBP9.8□□□□□ -0.84
SS18-204ENST00000539244 FNDC4Q9H6D8 234 aaPredicted RBP9.8□□□□□ -0.84
SS18-204ENST00000539244 MRPL36Q9P0J6 103 aaKnown RBP9.8□□□□□ -0.84
SS18-204ENST00000539244 DYNC1H1Q14204 4646 aaKnown RBP9.79□□□□□ -0.84
SS18-204ENST00000539244 KNCNA6PVL3 124 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 IGKV1-17P01599 117 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 ZNF688P0C7X2 276 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 RCVRNP35243 200 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 RPL5P46777 297 aaKnown RBP9.79□□□□□ -0.84
SS18-204ENST00000539244 BSXQ3C1V8 233 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 CENPSQ8N2Z9 138 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 TBC1D24Q9ULP9 559 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 U3KQE9 123 aa9.79□□□□□ -0.84
SS18-204ENST00000539244 SCGB2A1O75556 95 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 ATP6V1G2O95670 118 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 IFNA17P01571 189 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 APOA1P02647 267 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 MED14OSP0DP75 135 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 PPP5CP53041 499 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 LHFPL1Q86WI0 220 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 NARS2Q96I59 477 aaKnown RBP9.78□□□□□ -0.84
SS18-204ENST00000539244 TP53RKQ96S44 253 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 CELA1Q9UNI1 258 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 DNAH11Q96DT5 4516 aa9.78□□□□□ -0.84
SS18-204ENST00000539244 MUC4Q99102 2169 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 TRAV30A0A087WSZ9 112 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 ATG12O94817 140 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 OPRK1P41145 380 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 ETV6P41212 452 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 EIF2B2P49770 351 aaKnown RBP9.77□□□□□ -0.85
SS18-204ENST00000539244 AKR1C2P52895 323 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 PIGPP57054 158 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 C12orf74Q32Q52 190 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 ACTL10Q5JWF8 245 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 POM121L12Q8N7R1 296 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 TMEM230Q96A57 120 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 YIPF6Q96EC8 236 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 PDCD10Q9BUL8 212 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 SEPSECSQ9HD40 501 aaKnown RBP9.77□□□□□ -0.85
SS18-204ENST00000539244 CLEC5AQ9NY25 188 aa9.77□□□□□ -0.85
SS18-204ENST00000539244 PKD1P98161 4303 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 DEFB131BA0A096LNP1 70 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 SMIM31A0A1B0GVY4 71 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 HELTA6NFD8 242 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 P0DMU3 169 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 FAM231AP0DMU4 169 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 FAM231CP0DMU5 169 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 HOXA1P49639 335 aaPredicted RBP9.76□□□□□ -0.85
SS18-204ENST00000539244 AP2S1P53680 142 aaPredicted RBP9.76□□□□□ -0.85
SS18-204ENST00000539244 MLANAQ16655 118 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 AARDQ4LEZ3 155 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 C16orf54Q6UWD8 224 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 GLMPQ8WWB7 406 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 RAB40CQ96S21 281 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 C1QTNF4Q9BXJ3 329 aa9.76□□□□□ -0.85
SS18-204ENST00000539244 RYR1P21817 5038 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 A0A0G2JRQ6 117 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 C3orf85A0A1B0GTC6 90 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 M0QYG6 137 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 RTL8CO15255 209 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 HNRNPCP07910 306 aaKnown RBP eCLIP9.75□□□□□ -0.85
SS18-204ENST00000539244 IGLC1P0CG04 106 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 PGAM2P15259 253 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 PI3P19957 117 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 UCP1P25874 307 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 LSM3P62310 102 aaKnown RBP9.75□□□□□ -0.85
SS18-204ENST00000539244 DHRS2Q13268 280 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 TIGITQ495A1 244 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 SNX29P2Q8IUI4 249 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 ARRDC1Q8N5I2 433 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 NDUFAF3Q9BU61 184 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 ENY2Q9NPA8 101 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 COMMD3Q9UBI1 195 aa9.75□□□□□ -0.85
SS18-204ENST00000539244 RPS10-NUDT3A0A1W2PQS6 291 aa9.74□□□□□ -0.85
SS18-204ENST00000539244 PRSS29PA6NIE9 313 aa9.74□□□□□ -0.85
SS18-204ENST00000539244 B3GALNT1O75752 331 aa9.74□□□□□ -0.85
SS18-204ENST00000539244 YPEL3P61236 119 aaPredicted RBP9.74□□□□□ -0.85
SS18-204ENST00000539244 NUTF2P61970 127 aaKnown RBP9.74□□□□□ -0.85
SS18-204ENST00000539244 LGALS9BQ3B8N2 356 aa9.74□□□□□ -0.85
SS18-204ENST00000539244 PSMG4Q5JS54 123 aa9.74□□□□□ -0.85
SS18-204ENST00000539244 OR1S2Q8NGQ3 325 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms