RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 COL4A2P08572 1712 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 LEPP41159 167 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 PHLDA1Q8WV24 401 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-209ENST00000537178 LINC01549A6NIU2 74 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 CCL20P78556 96 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 TMEM86BQ8N661 226 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 FAM216BQ8N7L0 139 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 ZIC4Q8N9L1 334 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 NRN1Q9NPD7 142 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 NHP2Q9NX24 153 aaKnown RBP8.94□□□□□ -0.98
CLIP1-209ENST00000537178 LINC00312Q9Y6C7 94 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 MESP2Q0VG99 397 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 SRSF6Q13247 344 aaKnown RBP8.94□□□□□ -0.98
CLIP1-209ENST00000537178 OR13A1Q8NGR1 328 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 CNOT1A5YKK6 2376 aaKnown RBP8.94□□□□□ -0.98
CLIP1-209ENST00000537178 GGTLC3B5MD39 225 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 HBDP02042 147 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 SAA1P0DJI8 122 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-209ENST00000537178 ZNF585BQ52M93 769 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 PVRIGQ6DKI7 326 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 MIR17HGQ75NE6 70 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 PPP1R32Q7Z5V6 425 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 FAM57AQ8TBR7 257 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 LRRK1Q38SD2 2015 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 DPM2O94777 84 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 EGR4Q05215 589 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 PRSS53Q2L4Q9 553 aa8.94□□□□□ -0.98
CLIP1-209ENST00000537178 TRAV12-3A0A0B4J271 114 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 CD7P09564 240 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 SRSF1Q07955 248 aaKnown RBP eCLIP8.93□□□□□ -0.98
CLIP1-209ENST00000537178 ORMDL2Q53FV1 153 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 ZNF525Q8N782 197 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 C7orf69Q9H7B7 122 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 FAM168AQ92567 244 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 MRPL20Q9BYC9 149 aaKnown RBP8.93□□□□□ -0.98
CLIP1-209ENST00000537178 MEGF9Q9H1U4 602 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 TRAV21A0A0B4J279 112 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 A8MXK9 166 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 SMAD7O15105 426 aaKnown RBP8.93□□□□□ -0.98
CLIP1-209ENST00000537178 SERF1AO75920 110 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 C1QL2Q7Z5L3 287 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 LURAP1LQ8IV03 231 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 TMEM167AQ8TBQ9 72 aa8.93□□□□□ -0.98
CLIP1-209ENST00000537178 PROB1E7EW31 1015 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 ZP1P60852 638 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 FAM27E3Q08E93 113 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 COQ2Q96H96 371 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 OSTCQ9NRP0 149 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 CASP8AP2Q9UKL3 1982 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 RPL23P62829 140 aaKnown RBP8.92□□□□□ -0.98
CLIP1-209ENST00000537178 ATP1A1-AS1Q5TC04 95 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 NBR2O15453 112 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 GFRA3O60609 400 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 STHQ8IWL8 128 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 FDCSPQ8NFU4 85 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 JMJD8Q96S16 334 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 NDUFAF3Q9BU61 184 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 SLC25A2Q9BXI2 301 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 IGHV3OR16-8A0A075B7F1 116 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 TRAV9-2A0A087WT02 112 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 IGHV3-11P01762 117 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 DTX2Q86UW9 622 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 TMEM170AQ8WVE7 144 aa8.92□□□□□ -0.98
CLIP1-209ENST00000537178 A0A1W2PRE2 83 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 C4orf51C9J302 202 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 REPIN1Q9BWE0 567 aaKnown RBP8.91□□□□□ -0.98
CLIP1-209ENST00000537178 SSBP4Q9BWG4 385 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-209ENST00000537178 C1QTNF5Q9BXJ0 243 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 IGHV2OR16-5A0A0B4J2B6 119 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 A8MWV9 139 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 UPK2O00526 184 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 SP9P0CG40 484 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 LDLRAD2Q5SZI1 272 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 MORN3Q6PF18 240 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-209ENST00000537178 SEPSECSQ9HD40 501 aaKnown RBP8.91□□□□□ -0.98
CLIP1-209ENST00000537178 CADP27708 2225 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 HOXA3O43365 443 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-209ENST00000537178 RNF125Q96EQ8 232 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 NCOR1O75376 2440 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 CACNA1EQ15878 2313 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 IGKV3D-20A0A0C4DH25 116 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 LOC101059948A0A1B0GTJ6 334 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 GREM1O60565 184 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 IGHV4-39P01824 125 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 GATA2P23769 480 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-209ENST00000537178 PSG7Q13046 419 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 ATXN8Q156A1 80 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 PRSS22Q9GZN4 317 aa8.91□□□□□ -0.98
CLIP1-209ENST00000537178 TRGV4A0A0C4DH28 118 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 C17orf100A8MU93 164 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 CKS1BP61024 79 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 ANAPC13Q9BS18 74 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 EPDR1Q9UM22 224 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 TCF20Q9UGU0 1960 aaKnown RBP8.9□□□□□ -0.98
CLIP1-209ENST00000537178 CREBBPQ92793 2442 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 CDH23Q9H251 3354 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 TRGV11A0A075B6L2 103 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 LINC01559Q495D7 138 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 FAM201AQ5SY85 155 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 RTBDNQ9BSG5 229 aaPredicted RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms