RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-233	ENST00000535896	KLF3	P57682	345 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	MRPS11	P82912	194 aa	Known RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	PAX2	Q02962	417 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	REL	Q04864	619 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CD69	Q07108	199 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	KLF5	Q13887	457 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	EDDM3A	Q14507	147 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	PSG5	Q15238	335 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CLEC12B	Q2HXU8	276 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	C17orf58	Q2M2W7	97 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	KRTCAP3	Q53RY4	240 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SPINK9	Q5DT21	86 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CT83	Q5H943	113 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	COL5A1-AS1	Q5SY13	56 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	IBA57	Q5T440	356 aa	Known RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	STUM	Q69YW2	141 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TMEM136	Q6ZRR5	245 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SLC25A48	Q6ZT89	311 aa	Known RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	BHLHA15	Q7RTS1	189 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TCF23	Q7RTU1	214 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CXorf67	Q86X51	503 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR5T1	Q8NG75	326 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	RFESD	Q8TAC1	157 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SSMEM1	Q8WWF3	244 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	BBC3	Q96PG8	261 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR2V2	Q96R30	315 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TRIB1	Q96RU8	372 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	HSPB9	Q9BQS6	159 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SLC25A33	Q9BSK2	321 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	KRTAP4-2	Q9BYR5	136 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SAP30L	Q9HAJ7	183 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	NAT8B	Q9UHF3	227 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SLC25A15	Q9Y619	301 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	RAI1	Q7Z5J4	1906 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	GRIFIN	A4D1Z8	144 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	PGPEP1L	A6NFU8	196 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	DEFB108A	A8MXU0	73 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	NUPR1	O60356	82 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR2J3	O76001	311 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CGA	P01215	116 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	APOA2	P02652	100 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGFBP2	P18065	325 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	USF1	P22415	310 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TNFSF4	P23510	183 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CA7	P43166	264 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	IER3	P46695	156 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	COMP	P49747	757 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	FABP6	P51161	128 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF134	P52741	427 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SUB1	P53999	127 aa	Known RBP eCLIP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	SELENOV	P59797	346 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	MEF2C	Q06413	473 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	PRSS8	Q16651	343 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	RPL39P5	Q59GN2	51 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CT45A1	Q5HYN5	189 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TEX36	Q5VZQ5	186 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF833P	Q6ZTB9	187 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR8I2	Q8N0Y5	310 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ABHD12	Q8N2K0	398 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF843	Q8N446	348 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TPRX1	Q8N7U7	411 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CNEP1R1	Q8N9A8	125 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR2Z1	Q8NG97	314 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CT45A3	Q8NHU0	189 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	GAL3ST2	Q9H3Q3	398 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	C7orf69	Q9H7B7	122 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	GNB4	Q9HAV0	340 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF331	Q9NQX6	463 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	C1RL	Q9NZP8	487 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	RNF7	Q9UBF6	113 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	RPUSD1	Q9UJJ7	312 aa	Known RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZFP30	Q9Y2G7	519 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	TBL2	Q9Y4P3	447 aa	Known RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	LINC00312	Q9Y6C7	94 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	DSCAM	O60469	2012 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	LRRK2	Q5S007	2527 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	HEATR1	Q9H583	2144 aa	Known RBP	5.15	□□□□□ -1.58
SYNE1-233	ENST00000535896	FASN	P49327	2511 aa	Known RBP	5.15	□□□□□ -1.58
SYNE1-233	ENST00000535896	FLNC	Q14315	2725 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	INTS1	Q8N201	2190 aa	Known RBP	5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	TRAV3	A0A0B4J244	114 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	hADV38S2	A0JD32	116 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	PSMB11	A5LHX3	300 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	FAM231B	A6NCW3	169 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	NKX6-3	A6NJ46	265 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	GGTLC3	B5MD39	225 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	C22orf46	C9J442	243 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	DIRC3	C9JPN6	131 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	SLC17A3	O00476	420 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	OR7C2	O60412	319 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	IGLV2-8	P01709	118 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	RNASE2	P10153	161 aa	Known RBP	5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	HIST1H1E	P10412	219 aa	Known RBP	5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	CRYBB3	P26998	211 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	AMT	P48728	403 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	PRRX1	P54821	245 aa		5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	SUMO1	P63165	101 aa	Known RBP	5.15	□□□□□ -1.59
SYNE1-233	ENST00000535896	ERH	P84090	104 aa	Known RBP	5.15	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms