RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 HECW1Q76N89 1606 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 CR1P17927 2039 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 CEP295Q9C0D2 2601 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 HEATR5BQ9P2D3 2071 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 FCGBPQ9Y6R7 5405 aaPredicted RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 POLQO75417 2590 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 EXOC1LA0A1B0GW35 172 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 OR4C46A6NHA9 309 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 CLDN24A6NM45 220 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 TMEM212A6NML5 194 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 J3QRK9 145 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 MRPS14O60783 128 aaKnown RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 PROSCO94903 275 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 PRB1P04280 392 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 RBP1P09455 135 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 CCL5P13501 91 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 HIST1H1TP22492 207 aaPredicted RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 CASP1P29466 404 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 BRS3P32247 399 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 ANP32AP39687 249 aaKnown RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 ZNF80P51504 273 aaPredicted RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 YPEL3P61236 119 aaPredicted RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 RHOBP62745 196 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 RGS21Q2M5E4 152 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 ACOT6Q3I5F7 207 aaPredicted RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 LCN15Q6UWW0 184 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 DEFB128Q7Z7B8 93 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 OR6V1Q8N148 313 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 CLDN22Q8N7P3 220 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 ZNF565Q8N9K5 539 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 OR5A1Q8NGJ0 315 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 TOMM6Q96B49 74 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 C8orf76Q96K31 380 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 PPP1R2P1Q96PQ5 205 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 NIPSNAP1Q9BPW8 284 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 NHP2Q9NX24 153 aaKnown RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 CMTM6Q9NX76 183 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 PKIGQ9Y2B9 76 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 RP1P56715 2156 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 BAZ2BQ9UIF8 2168 aaKnown RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 PCDH15Q96QU1 1955 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 FLNAP21333 2647 aaKnown RBP0.95□□□□□ -2.26
CD44-238ENST00000534296 REV3LO60673 3130 aa0.95□□□□□ -2.26
CD44-238ENST00000534296 DISP1Q96F81 1524 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 KIF13BQ9NQT8 1826 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 SCAF11Q99590 1463 aaKnown RBP0.94□□□□□ -2.26
CD44-238ENST00000534296 SMARCA4P51532 1647 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 CREBBPQ92793 2442 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 TENM1Q9UKZ4 2725 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 IBA57-AS1B1ANH7 110 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 OR2B3O76000 313 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 ASAH2BP0C7U1 165 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 LYNX1P0DP58 116 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 RPL5P46777 297 aaKnown RBP0.94□□□□□ -2.26
CD44-238ENST00000534296 EDDM3AQ14507 147 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 UNQ6190/PRO20217Q6UXQ8 127 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 HIST3H2BBQ8N257 126 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 KLK6Q92876 244 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 TMEM147Q9BVK8 224 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 KIFC1Q9BW19 673 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 OR51V1Q9H2C8 321 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 C11orf68Q9H3H3 251 aaKnown RBP0.94□□□□□ -2.26
CD44-238ENST00000534296 OSTCQ9NRP0 149 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.94□□□□□ -2.26
CD44-238ENST00000534296 ERGIC3Q9Y282 383 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 SLC35A3Q9Y2D2 325 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 PKD1L1Q8TDX9 2849 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 MICAL3Q7RTP6 2002 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 RANBP2P49792 3224 aaKnown RBP0.94□□□□□ -2.26
CD44-238ENST00000534296 COL4A5P29400 1685 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 MED12LQ86YW9 2145 aa0.94□□□□□ -2.26
CD44-238ENST00000534296 NBEAL1Q6ZS30 2694 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 RYR3Q15413 4870 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 UBR5O95071 2799 aaPredicted RBP0.93□□□□□ -2.26
CD44-238ENST00000534296 SPTAN1Q13813 2472 aaKnown RBP0.93□□□□□ -2.26
CD44-238ENST00000534296 ZFYVE9O95405 1425 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 TRAPPC2LH3BP13 241 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 FAAHO00519 579 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 CHP2O43745 196 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 LYPLA2O95372 231 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 LSM6P62312 80 aaKnown RBP0.93□□□□□ -2.26
CD44-238ENST00000534296 AESQ08117 197 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 RHEBQ15382 184 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 AKIRIN2Q53H80 203 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 LYRM7Q5U5X0 104 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 CT55Q8WUE5 264 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 SLC50A1Q9BRV3 221 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 REG4Q9BYZ8 158 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 C6orf62Q9GZU0 229 aaPredicted RBP0.93□□□□□ -2.26
CD44-238ENST00000534296 MIXL1Q9H2W2 232 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 GLTPQ9NZD2 209 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 AMMECR1Q9Y4X0 333 aaPredicted RBP0.93□□□□□ -2.26
CD44-238ENST00000534296 LHFPL6Q9Y693 200 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 NSD1Q96L73 2696 aaPredicted RBP0.93□□□□□ -2.26
CD44-238ENST00000534296 DNHD1Q96M86 4753 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 DENND4CQ5VZ89 1909 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 GVINP1Q7Z2Y8 2422 aa0.93□□□□□ -2.26
CD44-238ENST00000534296 DNAH12Q6ZR08 3092 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 ZDBF2Q9HCK1 2354 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 ACACBO00763 2458 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms