RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 VN1R17PQ8TDU5 208 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 PDCD10Q9BUL8 212 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 ELOVL1Q9BW60 279 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 NMES1Q9C002 83 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 TRAV14DV4A0A0A6YYC5 116 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 KANTRA0A1W2PQU2 76 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 KRBOX1C9JBD0 128 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 SRPXP78539 464 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 SLC25A24Q6NUK1 477 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 ACOT7LQ6ZUV0 252 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 SLC35G3Q8N808 338 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 OR9G4Q8NGQ1 327 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 COQ8AQ8NI60 647 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 THAP6Q8TBB0 222 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 LRRC20Q8TCA0 184 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 MRAPQ8TCY5 172 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 OR4C12Q96R67 309 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 TNFSF18Q9UNG2 199 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 S4R3C0 116 aa11.5□□□□□ -0.57
CPSF1-208ENST00000532560 PIGBOS1A0A0B4J2F0 54 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 PPP5D1E7EU14 171 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 K7EIL1 84 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 BCL2L11O43521 198 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 GGCTO75223 188 aaKnown RBP11.49□□□□□ -0.57
CPSF1-208ENST00000532560 IFNA17P01571 189 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 IGHV3-23P01764 117 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 NMBP08949 121 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 ARL3P36405 182 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 ERHP84090 104 aaKnown RBP11.49□□□□□ -0.57
CPSF1-208ENST00000532560 PPP1R1AQ13522 171 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 CLEC19AQ6UXS0 136 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 Q6ZRM9 215 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 LGI3Q8N145 548 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 OR52E5Q8NH55 327 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 WDR89Q96FK6 387 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-208ENST00000532560 ATP6V0BQ99437 205 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-208ENST00000532560 CACNG5Q9UF02 275 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 TGP01266 2768 aa11.49□□□□□ -0.57
CPSF1-208ENST00000532560 PRKDCP78527 4128 aaKnown RBP11.48□□□□□ -0.57
CPSF1-208ENST00000532560 WI2-2373I1.2A0A1W2PRP0 233 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 K7EIM0 57 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 PET100P0DJ07 73 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 HOXA1P49639 335 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-208ENST00000532560 SPINK9Q5DT21 86 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 IL34Q6ZMJ4 242 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 INO80EQ8NBZ0 244 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-208ENST00000532560 GPR146Q96CH1 333 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 SIGLEC8Q9NYZ4 499 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 PRR13Q9NZ81 148 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 PEMTQ9UBM1 199 aa11.48□□□□□ -0.57
CPSF1-208ENST00000532560 ZNF256Q9Y2P7 627 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-208ENST00000532560 DUXBA0A1W2PPF3 345 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 LGALS9O00182 355 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 SFT2D2O95562 160 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 GPR183P32249 361 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 SPCS3P61009 180 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 NMSQ5H8A3 153 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 GPHB5Q86YW7 130 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 SUN5Q8TC36 379 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 PPP1R1CQ8WVI7 109 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 ST8SIA2Q92186 375 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 C21orf62Q9NYP8 219 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 CACFD1Q9UGQ2 172 aa11.47□□□□□ -0.57
CPSF1-208ENST00000532560 OR2C1O95371 312 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 IGLV1-51P01701 117 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 CLEC3BP05452 202 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 CSN3P07498 182 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 VAMP1P23763 118 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 NUP62P37198 522 aaPredicted RBP11.46□□□□□ -0.57
CPSF1-208ENST00000532560 LYZL2Q7Z4W2 148 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 LRTM2Q8N967 370 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 BSCL2Q96G97 398 aaPredicted RBP11.46□□□□□ -0.57
CPSF1-208ENST00000532560 ENY2Q9NPA8 101 aa11.46□□□□□ -0.57
CPSF1-208ENST00000532560 RNF222A6NCQ9 220 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 I3L2K1 104 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 TGOLN2O43493 480 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 LYL1P12980 280 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 SNCAP37840 140 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 EIF5AP63241 154 aaKnown RBP11.45□□□□□ -0.58
CPSF1-208ENST00000532560 BSXQ3C1V8 233 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 ANKRD55Q3KP44 614 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 PVRIGQ6DKI7 326 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 SPSB3Q6PJ21 355 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 STOML3Q8TAV4 291 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 MISP3Q96FF7 219 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 PRR25Q96S07 402 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 ARPC5LQ9BPX5 153 aa11.45□□□□□ -0.58
CPSF1-208ENST00000532560 IGHV3-21A0A0B4J1V1 117 aa11.44□□□□□ -0.58
CPSF1-208ENST00000532560 A8MWP6 167 aa11.44□□□□□ -0.58
CPSF1-208ENST00000532560 F8W735 103 aaPredicted RBP11.44□□□□□ -0.58
CPSF1-208ENST00000532560 RNASE2P10153 161 aaKnown RBP11.44□□□□□ -0.58
CPSF1-208ENST00000532560 FCGR2BP31994 310 aaPredicted RBP11.44□□□□□ -0.58
CPSF1-208ENST00000532560 SUB1P53999 127 aaKnown RBP eCLIP11.44□□□□□ -0.582e-6■□□□□ 10.1
CPSF1-208ENST00000532560 SMCO1Q147U7 214 aa11.44□□□□□ -0.58
CPSF1-208ENST00000532560 FAM106AQ4KMX7 169 aa11.44□□□□□ -0.58
CPSF1-208ENST00000532560 ALKAL2Q6UX46 152 aa11.44□□□□□ -0.58
CPSF1-208ENST00000532560 GAR1Q9NY12 217 aaKnown RBP11.44□□□□□ -0.58
CPSF1-208ENST00000532560 A0A1B0GU03 582 aa11.43□□□□□ -0.58
CPSF1-208ENST00000532560 C5orf51A6NDU8 294 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms