RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 V9GYY9 64 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 IGKV1D-42A0A075B6H8 117 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 EXOC1LA0A1B0GW35 172 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 K7EN84 100 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 TOR1AO14656 332 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 PSPHP1O15172 72 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 CCL18P55774 89 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 HPCAP84074 193 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 IFITM3Q01628 133 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 MEF2CQ06413 473 aaPredicted RBP2.17□□□□□ -2.06
CD44-235ENST00000532339 VAMP3Q15836 100 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 TAL2Q16559 108 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 C6orf99Q4VX62 202 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 MRPL2Q5T653 305 aaKnown RBP2.17□□□□□ -2.06
CD44-235ENST00000532339 TCF24Q7RTU0 167 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 Q8N6K4 173 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 TCTEX1D1Q8N7M0 179 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 CYB561A3Q8NBI2 242 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 OR8S1Q8NH09 359 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 OR5J2Q8NH18 312 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 SFXN5Q8TD22 340 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 OR5P2Q8WZ92 322 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 GHSRQ92847 366 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 ROPN1LQ96C74 230 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 TSNAXQ99598 290 aaKnown RBP2.17□□□□□ -2.06
CD44-235ENST00000532339 RTBDNQ9BSG5 229 aaPredicted RBP2.17□□□□□ -2.06
CD44-235ENST00000532339 C6orf62Q9GZU0 229 aaPredicted RBP2.17□□□□□ -2.06
CD44-235ENST00000532339 DPH3P1Q9H4G8 78 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 ZNF229Q9UJW7 825 aa2.17□□□□□ -2.06
CD44-235ENST00000532339 TRAV8-7A0A075B6U6 113 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 IGKV1D-43A0A0B4J1Z2 117 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 IGHV7-4-1A0A0J9YVY3 117 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 A0A1B0GW64 132 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 hADV38S2A0JD32 116 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 ANKRD20A5PA0PJZ0 165 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 TRAPPC13A5PLN9 417 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 TVP23AA6NH52 213 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 ZNF850A8MQ14 1090 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 KMT2DO14686 5537 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 ZNF324O75467 553 aaPredicted RBP2.16□□□□□ -2.06
CD44-235ENST00000532339 MED6O75586 246 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 UPK1BO75841 260 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 SC5DO75845 299 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 CCNKO75909 580 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 HLA-DQA1P01909 254 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 MT-ND4P03905 459 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 DBIP07108 87 aaKnown RBP2.16□□□□□ -2.06
CD44-235ENST00000532339 LINC00869P0C866 280 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 CD40LGP29965 261 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 OPRK1P41145 380 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 GALR1P47211 349 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 TPPP2P59282 170 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 TAS2R60P59551 318 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 RPL37AP61513 92 aaKnown RBP2.16□□□□□ -2.06
CD44-235ENST00000532339 FMODQ06828 376 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 C2orf54Q08AI8 447 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 LINC00483Q53H64 154 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 TCF23Q7RTU1 214 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 SCXQ7RTU7 201 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 RBM45Q8IUH3 476 aaKnown RBP2.16□□□□□ -2.06
CD44-235ENST00000532339 TRIML2Q8N7C3 387 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 LINC00469Q8N7U9 141 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 OR6N2Q8NGY6 317 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 OR2T10Q8NGZ9 312 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 ENKURQ8TC29 256 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 LRRC20Q8TCA0 184 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 HAVCR2Q8TDQ0 301 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 CASTOR1Q8WTX7 329 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 C1orf54Q8WWF1 131 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 C20orf144Q9BQM9 153 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 SULT4A1Q9BR01 284 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 RSG1Q9BU20 258 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 PRRG3Q9BZD7 231 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 SYT4Q9H2B2 425 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 TAS2R5Q9NYW4 299 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 STX18Q9P2W9 335 aaKnown RBP2.16□□□□□ -2.06
CD44-235ENST00000532339 PCTPQ9UKL6 214 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 POLR3HQ9Y535 204 aaPredicted RBP2.16□□□□□ -2.06
CD44-235ENST00000532339 RFNGQ9Y644 331 aa2.16□□□□□ -2.06
CD44-235ENST00000532339 ERICH4A6NGS2 130 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 LRRN3E7EW58 273 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 H7C2Y5 167 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 M0R1X1 148 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 HAND1O96004 215 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 IGLV2-8P01709 118 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 MRPL3P09001 348 aaKnown RBP2.15□□□□□ -2.07
CD44-235ENST00000532339 ZNF688P0C7X2 276 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 IFFO1Q0D2I5 559 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 FUT5Q11128 374 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 TNXAQ16473 311 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 PRSS8Q16651 343 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 MORN3Q6PF18 240 aaPredicted RBP2.15□□□□□ -2.07
CD44-235ENST00000532339 ZCCHC23Q6ZST2 131 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 CYP4Z1Q86W10 505 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 TMEM256Q8N2U0 113 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 OR5AK3PQ8NH89 298 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 LGALS14Q8TCE9 139 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 LINC01600Q96MT4 127 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 SPACA5Q96QH8 159 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 RNF5Q99942 180 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms