RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RNASE2P10153 161 aaKnown RBP17.04■□□□□ 0.32
CPSF1-202ENST00000527827 CRYBB3P26998 211 aa17.04■□□□□ 0.32
CPSF1-202ENST00000527827 PPP5CP53041 499 aa17.04■□□□□ 0.32
CPSF1-202ENST00000527827 DCANP1Q8TF63 244 aa17.04■□□□□ 0.32
CPSF1-202ENST00000527827 FNDC4Q9H6D8 234 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-202ENST00000527827 DNAH17Q9UFH2 4485 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 DNAH2Q9P225 4427 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 ATP6V1G2O95670 118 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 ZNF688P0C7X2 276 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 P2RY1P47900 373 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 MLANAQ16655 118 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 LINC00336Q6ZUF6 198 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 SLC35G3Q8N808 338 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 CSNK1G2-AS1Q8NCQ2 148 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 METTL26Q96S19 204 aa17.03■□□□□ 0.32
CPSF1-202ENST00000527827 PKHD1P08F94 4074 aa17.02■□□□□ 0.32
CPSF1-202ENST00000527827 A0A1B0GVY2 172 aa17.02■□□□□ 0.32
CPSF1-202ENST00000527827 CLN5O75503 358 aa17.02■□□□□ 0.32
CPSF1-202ENST00000527827 SCPEP1Q9HB40 452 aa17.02■□□□□ 0.32
CPSF1-202ENST00000527827 CLEC5AQ9NY25 188 aa17.02■□□□□ 0.32
CPSF1-202ENST00000527827 CORTO00230 105 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 RCVRNP35243 200 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 RND3P61587 244 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 LSM3P62310 102 aaKnown RBP17.01■□□□□ 0.31
CPSF1-202ENST00000527827 ACTL10Q5JWF8 245 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 OR4X1Q8NH49 305 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 RNF126Q9BV68 326 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 CELA1Q9UNI1 258 aa17.01■□□□□ 0.31
CPSF1-202ENST00000527827 IFNA17P01571 189 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 PI3P19957 117 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 ETV6P41212 452 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 KCTD21Q4G0X4 260 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 SNX29P2Q8IUI4 249 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 YIPF6Q96EC8 236 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 TP53RKQ96S44 253 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 TBC1D24Q9ULP9 559 aa17■□□□□ 0.31
CPSF1-202ENST00000527827 RYR1P21817 5038 aa16.99■□□□□ 0.31
CPSF1-202ENST00000527827 M0QYG6 137 aa16.99■□□□□ 0.31
CPSF1-202ENST00000527827 IGKV1-17P01599 117 aa16.99■□□□□ 0.31
CPSF1-202ENST00000527827 SUB1P53999 127 aaKnown RBP eCLIP16.99■□□□□ 0.31
CPSF1-202ENST00000527827 TMEM230Q96A57 120 aa16.99■□□□□ 0.31
CPSF1-202ENST00000527827 COMMD3Q9UBI1 195 aa16.99■□□□□ 0.31
CPSF1-202ENST00000527827 APOA1P02647 267 aa16.98■□□□□ 0.31
CPSF1-202ENST00000527827 OPRK1P41145 380 aa16.98■□□□□ 0.31
CPSF1-202ENST00000527827 RPL5P46777 297 aaKnown RBP16.98■□□□□ 0.31
CPSF1-202ENST00000527827 HOXA1P49639 335 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-202ENST00000527827 AKR1C2P52895 323 aa16.98■□□□□ 0.31
CPSF1-202ENST00000527827 C12orf74Q32Q52 190 aa16.98■□□□□ 0.31
CPSF1-202ENST00000527827 TIGITQ495A1 244 aa16.98■□□□□ 0.31
CPSF1-202ENST00000527827 ZNF486Q96H40 463 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-202ENST00000527827 U3KQE9 123 aa16.98■□□□□ 0.31
CPSF1-202ENST00000527827 A0A0G2JRQ6 117 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 SMIM31A0A1B0GVY4 71 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 AMBPP02760 352 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 PGAM2P15259 253 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 PIGPP57054 158 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 BSXQ3C1V8 233 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 ZNF767PQ75MW2 155 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 LHFPL1Q86WI0 220 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 CENPSQ8N2Z9 138 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 RAB40CQ96S21 281 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 PDCD10Q9BUL8 212 aa16.97■□□□□ 0.31
CPSF1-202ENST00000527827 DEFB131BA0A096LNP1 70 aa16.96■□□□□ 0.31
CPSF1-202ENST00000527827 DHRS2Q13268 280 aa16.96■□□□□ 0.31
CPSF1-202ENST00000527827 NARS2Q96I59 477 aaKnown RBP16.96■□□□□ 0.31
CPSF1-202ENST00000527827 SCRT1Q9BWW7 348 aa16.96■□□□□ 0.31
CPSF1-202ENST00000527827 C3orf85A0A1B0GTC6 90 aa16.95■□□□□ 0.3
CPSF1-202ENST00000527827 PSMG4Q5JS54 123 aa16.95■□□□□ 0.3
CPSF1-202ENST00000527827 C16orf54Q6UWD8 224 aa16.95■□□□□ 0.3
CPSF1-202ENST00000527827 ENY2Q9NPA8 101 aa16.95■□□□□ 0.3
CPSF1-202ENST00000527827 ATG12O94817 140 aa16.94■□□□□ 0.3
CPSF1-202ENST00000527827 ELK1P19419 428 aa16.94■□□□□ 0.3
CPSF1-202ENST00000527827 SP6Q3SY56 376 aa16.94■□□□□ 0.3
CPSF1-202ENST00000527827 POM121L12Q8N7R1 296 aa16.94■□□□□ 0.3
CPSF1-202ENST00000527827 GLMPQ8WWB7 406 aa16.94■□□□□ 0.3
CPSF1-202ENST00000527827 MUC4Q99102 2169 aa16.94■□□□□ 0.3
CPSF1-202ENST00000527827 TRAV30A0A087WSZ9 112 aa16.93■□□□□ 0.3
CPSF1-202ENST00000527827 HELTA6NFD8 242 aa16.93■□□□□ 0.3
CPSF1-202ENST00000527827 RTL8CO15255 209 aa16.93■□□□□ 0.3
CPSF1-202ENST00000527827 SCGB2A1O75556 95 aa16.93■□□□□ 0.3
CPSF1-202ENST00000527827 TRIM16LQ309B1 348 aa16.93■□□□□ 0.3
CPSF1-202ENST00000527827 Q6ZRM9 215 aa16.93■□□□□ 0.3
CPSF1-202ENST00000527827 DYNC1H1Q14204 4646 aaKnown RBP16.93■□□□□ 0.3
CPSF1-202ENST00000527827 HPGDSO60760 199 aa16.92■□□□□ 0.3
CPSF1-202ENST00000527827 HNRNPCP07910 306 aaKnown RBP eCLIP16.92■□□□□ 0.3
CPSF1-202ENST00000527827 IGLC1P0CG04 106 aa16.92■□□□□ 0.3
CPSF1-202ENST00000527827 P0DMU3 169 aa16.92■□□□□ 0.3
CPSF1-202ENST00000527827 FAM231AP0DMU4 169 aa16.92■□□□□ 0.3
CPSF1-202ENST00000527827 FAM231CP0DMU5 169 aa16.92■□□□□ 0.3
CPSF1-202ENST00000527827 EIF2B2P49770 351 aaKnown RBP16.92■□□□□ 0.3
CPSF1-202ENST00000527827 RNASE12Q5GAN4 147 aaKnown RBP16.92■□□□□ 0.3
CPSF1-202ENST00000527827 KLK11Q9UBX7 282 aa16.92■□□□□ 0.3
CPSF1-202ENST00000527827 PRSS29PA6NIE9 313 aa16.91■□□□□ 0.3
CPSF1-202ENST00000527827 MED14OSP0DP75 135 aa16.91■□□□□ 0.3
CPSF1-202ENST00000527827 UCP1P25874 307 aa16.91■□□□□ 0.3
CPSF1-202ENST00000527827 AARDQ4LEZ3 155 aa16.91■□□□□ 0.3
CPSF1-202ENST00000527827 RNASE10Q5GAN6 216 aaKnown RBP16.91■□□□□ 0.3
CPSF1-202ENST00000527827 PRSS54Q6PEW0 395 aa16.91■□□□□ 0.3
CPSF1-202ENST00000527827 ARRDC1Q8N5I2 433 aa16.91■□□□□ 0.3
CPSF1-202ENST00000527827 DNAH11Q96DT5 4516 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms