RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 NOTCH2Q04721 2471 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 GPX4P36969 197 aaPredicted RBP15.01□□□□□ -0.01
VPS28-207ENST00000526977 B2MP61769 119 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 MMDQ15546 238 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 SLC35E3Q7Z769 313 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 CACNG8Q8WXS5 425 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 P2RX4Q99571 388 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 SMCO4Q9NRQ5 59 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 KCNIP2Q9NS61 270 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 METTL1Q9UBP6 276 aaKnown RBP15.01□□□□□ -0.01
VPS28-207ENST00000526977 ZANQ9Y493 2812 aa15.01□□□□□ -0.01
VPS28-207ENST00000526977 IGKV1OR2-108A0A075B7D4 117 aa15□□□□□ -0.01
VPS28-207ENST00000526977 A0A1W2PPV4 95 aa15□□□□□ -0.01
VPS28-207ENST00000526977 H3BQ15 152 aa15□□□□□ -0.01
VPS28-207ENST00000526977 NBR2O15453 112 aa15□□□□□ -0.01
VPS28-207ENST00000526977 CD5LO43866 347 aa15□□□□□ -0.01
VPS28-207ENST00000526977 LINC00869P0C866 280 aa15□□□□□ -0.01
VPS28-207ENST00000526977 TMEM11P17152 192 aa15□□□□□ -0.01
VPS28-207ENST00000526977 PRR20EP86478 221 aa15□□□□□ -0.01
VPS28-207ENST00000526977 PRR20CP86479 221 aa15□□□□□ -0.01
VPS28-207ENST00000526977 PRR20DP86480 221 aa15□□□□□ -0.01
VPS28-207ENST00000526977 PRR20BP86481 221 aa15□□□□□ -0.01
VPS28-207ENST00000526977 PRR20AP86496 221 aa15□□□□□ -0.01
VPS28-207ENST00000526977 PPP1R27Q86WC6 154 aa15□□□□□ -0.01
VPS28-207ENST00000526977 Q8N6K4 173 aa15□□□□□ -0.01
VPS28-207ENST00000526977 STPG3Q8N7X2 389 aa15□□□□□ -0.01
VPS28-207ENST00000526977 GATAD1Q8WUU5 269 aa15□□□□□ -0.01
VPS28-207ENST00000526977 SLC45A2Q9UMX9 530 aa15□□□□□ -0.01
VPS28-207ENST00000526977 NDUFA3O95167 84 aa15□□□□□ -0.01
VPS28-207ENST00000526977 MAS1LP35410 378 aa15□□□□□ -0.01
VPS28-207ENST00000526977 SUB1P53999 127 aaKnown RBP eCLIP15□□□□□ -0.01
VPS28-207ENST00000526977 TNXAQ16473 311 aa15□□□□□ -0.01
VPS28-207ENST00000526977 FAM90A2PQ658T7 463 aa15□□□□□ -0.01
VPS28-207ENST00000526977 C9orf139Q6ZV77 190 aa15□□□□□ -0.01
VPS28-207ENST00000526977 C1RLQ9NZP8 487 aa15□□□□□ -0.01
VPS28-207ENST00000526977 IGLC7A0M8Q6 106 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 ACTL6BO94805 426 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 CD81P60033 236 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 FAM120AOSQ5T036 256 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 OR2T6Q8NHC8 308 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 RNASEH2CQ8TDP1 164 aaKnown RBP14.99□□□□□ -0.01
VPS28-207ENST00000526977 FBXL15Q9H469 300 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 ZNF469Q96JG9 3925 aaPredicted RBP14.99□□□□□ -0.01
VPS28-207ENST00000526977 COLCA2A8K830 154 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 REG1AP05451 166 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 RPL27AP46776 148 aaKnown RBP14.99□□□□□ -0.01
VPS28-207ENST00000526977 PSMB3P49720 205 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 COMPP49747 757 aaPredicted RBP14.99□□□□□ -0.01
VPS28-207ENST00000526977 RHEBQ15382 184 aa14.99□□□□□ -0.01
VPS28-207ENST00000526977 FCN1O00602 326 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 MEF2BQ02080 365 aaPredicted RBP14.98□□□□□ -0.01
VPS28-207ENST00000526977 PLGLAQ15195 96 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 SLC16A13Q7RTY0 426 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 IQCF2Q8IXL9 164 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 ABHD5Q8WTS1 349 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 SSX3Q99909 188 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 MANBALQ9NQG1 85 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 TEX15Q9BXT5 2789 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 AKAP9Q99996 3911 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 PLXNB1O43157 2135 aa14.98□□□□□ -0.01
VPS28-207ENST00000526977 FLNAP21333 2647 aaKnown RBP14.97□□□□□ -0.01
VPS28-207ENST00000526977 NCBP2LA6PVI3 153 aaKnown RBP14.97□□□□□ -0.01
VPS28-207ENST00000526977 FNDC4Q9H6D8 234 aaPredicted RBP14.97□□□□□ -0.01
VPS28-207ENST00000526977 STAG3L2P0CL84 134 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 STAG3L3P0CL85 134 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 OR10J1P30954 320 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 TAGLN2P37802 199 aaKnown RBP14.97□□□□□ -0.01
VPS28-207ENST00000526977 GNB1P62873 340 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 SSBP2P81877 361 aaPredicted RBP14.97□□□□□ -0.01
VPS28-207ENST00000526977 KRTAP1-1Q07627 177 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 PVRIGQ6DKI7 326 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 PIFOQ8TCI5 191 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 NIPSNAP3BQ9BS92 247 aa14.97□□□□□ -0.01
VPS28-207ENST00000526977 SEPSECSQ9HD40 501 aaKnown RBP14.97□□□□□ -0.01
VPS28-207ENST00000526977 CSPG4Q6UVK1 2322 aa14.96□□□□□ -0.01
VPS28-207ENST00000526977 PAGE4O60829 102 aa14.96□□□□□ -0.01
VPS28-207ENST00000526977 AREGP15514 252 aa14.96□□□□□ -0.01
VPS28-207ENST00000526977 C5orf64Q2M2E5 130 aa14.96□□□□□ -0.01
VPS28-207ENST00000526977 TUBA4BQ9H853 241 aa14.96□□□□□ -0.01
VPS28-207ENST00000526977 SOX21Q9Y651 276 aaPredicted RBP14.96□□□□□ -0.01
VPS28-207ENST00000526977 MYO9AB2RTY4 2548 aa14.96□□□□□ -0.01
VPS28-207ENST00000526977 CELSR1Q9NYQ6 3014 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 FBLN7Q53RD9 439 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 MRPL41Q8IXM3 137 aaKnown RBP14.95□□□□□ -0.02
VPS28-207ENST00000526977 TVP23CQ96ET8 276 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 ACY3Q96HD9 319 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 SLC35E1Q96K37 410 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 TEX22C9J3V5 150 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 APELAP0DMC3 54 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 GATA2P23769 480 aaPredicted RBP14.95□□□□□ -0.02
VPS28-207ENST00000526977 MFAP2P55001 183 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 RHOBP62745 196 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 SPATA31B1PQ5VZV4 182 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 C15orf54Q8N8G6 183 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 PITPNC1Q9UKF7 332 aa14.95□□□□□ -0.02
VPS28-207ENST00000526977 ARL14EPLP0DKL9 152 aa14.94□□□□□ -0.02
VPS28-207ENST00000526977 DEFB112Q30KQ8 113 aa14.94□□□□□ -0.02
VPS28-207ENST00000526977 BCL6BQ8N143 479 aaPredicted RBP14.94□□□□□ -0.02
VPS28-207ENST00000526977 ZNF114Q8NC26 417 aa14.94□□□□□ -0.02
VPS28-207ENST00000526977 RBM14Q96PK6 669 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 197.1 ms