RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SCARB1Q8WTV0 552 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 PINX1Q96BK5 328 aaKnown RBP7.75□□□□□ -1.17
VPS28-204ENST00000526054 CCDC140Q96MF4 163 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 RCHY1Q96PM5 261 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 CIB3Q96Q77 187 aaPredicted RBP7.75□□□□□ -1.17
VPS28-204ENST00000526054 ATP6V0BQ99437 205 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 GAR1Q9NY12 217 aaKnown RBP7.75□□□□□ -1.17
VPS28-204ENST00000526054 C21orf62Q9NYP8 219 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 IGHV3-21A0A0B4J1V1 117 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 RPS10-NUDT3A0A1W2PQS6 291 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 PPP5D1E7EU14 171 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 I3L2K1 104 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 K7EIM0 57 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 BMPR1BO00238 502 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 WRBO00258 174 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 CCNKO75909 580 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 MT-CO2P00403 227 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 IFNA10P01566 189 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 GPR183P32249 361 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 OPRK1P41145 380 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 ATP5IP56385 69 aaPredicted RBP7.74□□□□□ -1.17
VPS28-204ENST00000526054 IAH1Q2TAA2 248 aaPredicted RBP7.74□□□□□ -1.17
VPS28-204ENST00000526054 BSXQ3C1V8 233 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 C2orf83Q53S99 150 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 Q56UQ5 140 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 PVRIGQ6DKI7 326 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 SBSPONQ8IVN8 264 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 UBAC2Q8NBM4 344 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 OR11H7Q8NGC8 314 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 DLX4Q92988 240 aaPredicted RBP7.74□□□□□ -1.17
VPS28-204ENST00000526054 ELOVL1Q9BW60 279 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 U3KQ87 197 aa7.74□□□□□ -1.17
VPS28-204ENST00000526054 FAM25EA8MYX2 175 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 TGOLN2O43493 480 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 SYNGR2O43760 224 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 SCGB2A1O75556 95 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 CLEC3BP05452 202 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 FRMD6-AS1P0C7T7 363 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 IAPPP10997 89 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 GP9P14770 177 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 FCGR2BP31994 310 aaPredicted RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 NKX2-1P43699 371 aaPredicted RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 MFAP4P55083 255 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 SYNJ2BPP57105 145 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 RPP30P78346 268 aaKnown RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 KLF5Q13887 457 aaPredicted RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 CASC10Q5T4H9 136 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 ACSM6Q6P461 480 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 SPSB3Q6PJ21 355 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 ZBTB8BQ8NAP8 495 aaPredicted RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 OR4D5Q8NGN0 318 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 RNASEH2CQ8TDP1 164 aaKnown RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 ASB13Q8WXK3 278 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 BSCL2Q96G97 398 aaPredicted RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 TXN2Q99757 166 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 ZNF436Q9C0F3 470 aaPredicted RBP7.73□□□□□ -1.17
VPS28-204ENST00000526054 PEMTQ9UBM1 199 aa7.73□□□□□ -1.17
VPS28-204ENST00000526054 C5orf51A6NDU8 294 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 OR2T8A6NH00 312 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 MPTX1A8MV57 137 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 CCSO14618 274 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 NUPL2O15504 423 aaKnown RBP7.72□□□□□ -1.17
VPS28-204ENST00000526054 GNG7O60262 68 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 SCGB1D2O95969 90 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 GIPP09681 153 aaPredicted RBP7.72□□□□□ -1.17
VPS28-204ENST00000526054 CXCL3P19876 107 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 NPBWR1P48145 328 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 ID3Q02535 119 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 FAM106AQ4KMX7 169 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 ETFRF1Q6IPR1 90 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 GSG1LQ6UXU4 331 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 OR9G4Q8NGQ1 327 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 OR10C1Q96KK4 312 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 OR4C12Q96R67 309 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 NEURL2Q9BR09 285 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 MAGT1Q9H0U3 335 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 ZMAT4Q9H898 229 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 GSKIPQ9P0R6 139 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 TENM2Q9NT68 2774 aa7.72□□□□□ -1.17
VPS28-204ENST00000526054 EPPK1P58107 5090 aaKnown RBP7.72□□□□□ -1.17
VPS28-204ENST00000526054 LYSTQ99698 3801 aa7.71□□□□□ -1.17
VPS28-204ENST00000526054 SSSCA1O60232 199 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 OR2C1O95371 312 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 IGHV3-48P01763 117 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 IFNA4P05014 189 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 SLC25A4P12235 298 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 RAB11AP62491 216 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 RELQ04864 619 aaPredicted RBP7.71□□□□□ -1.18
VPS28-204ENST00000526054 GPHB5Q86YW7 130 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 PPP1R14BQ96C90 147 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 C2orf50Q96LR7 162 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 ZC4H2Q9NQZ6 224 aa7.71□□□□□ -1.18
VPS28-204ENST00000526054 PAIP2BQ9ULR5 123 aaKnown RBP7.71□□□□□ -1.18
VPS28-204ENST00000526054 F8W735 103 aaPredicted RBP7.7□□□□□ -1.18
VPS28-204ENST00000526054 LGALS9O00182 355 aa7.7□□□□□ -1.18
VPS28-204ENST00000526054 SIX6O95475 246 aa7.7□□□□□ -1.18
VPS28-204ENST00000526054 LYL1P12980 280 aa7.7□□□□□ -1.18
VPS28-204ENST00000526054 H2BFSP57053 126 aa7.7□□□□□ -1.18
VPS28-204ENST00000526054 RAP2BP61225 183 aa7.7□□□□□ -1.18
VPS28-204ENST00000526054 POLR2GP62487 172 aaKnown RBP eCLIP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms