RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 OR1L1Q8NH94 360 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ATP6V0E2Q8NHE4 81 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR51E1Q8TCB6 317 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SLC37A2Q8TED4 501 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TWIST2Q8WVJ9 160 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 FRZBQ92765 325 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 PLEKHB2Q96CS7 222 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 DDIT4LQ96D03 193 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 DYNLL2Q96FJ2 89 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 LINC00477Q96M19 166 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF488Q96MN9 340 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 IP6K3Q96PC2 410 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 AP1S3Q96PC3 154 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A21Q9BQT8 299 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 PRADC1Q9BSG0 188 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SNRNP25Q9BV90 132 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 GGTLC1Q9BX51 225 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR2H1Q9GZK4 316 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 FXYD6Q9H0Q3 95 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 GABARAPL1Q9H0R8 117 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SLC35B3Q9H1N7 401 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 MS4A6AQ9H2W1 248 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TCEAL2Q9H3H9 227 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 POMKQ9H5K3 350 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 PARP11Q9NR21 331 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 NDUFB11Q9NX14 153 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF226Q9NYT6 803 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SIGLEC8Q9NYZ4 499 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 IDI2-AS1Q9NZ38 188 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 IL36GQ9NZH8 169 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR5V1Q9UGF6 321 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 RABAC1Q9UI14 185 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 COQ4Q9Y3A0 265 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 NOP16Q9Y3C1 178 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 HELZP42694 1942 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 LAMA4Q16363 1823 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 DNMT1P26358 1616 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 SLIT1O75093 1534 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 RGPD2P0DJD1 1756 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 STRCQ7RTU9 1775 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PLCH1Q4KWH8 1693 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 NRKQ7Z2Y5 1582 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PXDNLA1KZ92 1463 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 QSER1Q2KHR3 1735 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 NUP188Q5SRE5 1749 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 DDX60Q8IY21 1712 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 MYO18AQ92614 2054 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 NSG1A0A0A6YYJ2 146 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 C7orf71A4D174 169 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ZNF850A8MQ14 1090 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 CEACAM18A8MTB9 384 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 UMAD1C9J7I0 102 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TMEM250H0YL14 139 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 H3BRM9 83 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 APOC4-APOC2K7ER74 178 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PLPP1O14494 284 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 NPFFO15130 113 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TAPBPO15533 448 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 NPIPB7O75200 414 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 MPDU1O75352 247 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 UBL3O95164 117 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 SFT2D2O95562 160 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ZNF682O95780 498 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 NCR2O95944 276 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PFN1P07737 140 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 IL3P08700 152 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 IFITM1P13164 125 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 RPL7P18124 248 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 NTF3P20783 257 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PPIBP23284 216 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 GRPRP30550 384 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PRSS3P35030 304 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 SRP14P37108 136 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 LEPP41159 167 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 KIR2DS2P43631 304 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 CRISP3P54108 245 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 FOXA1P55317 472 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ZNF92Q03936 586 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 Q0VG73 95 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 UNC119Q13432 240 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 C1orf61Q13536 156 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 C1DQ13901 141 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 MEIG1Q5JSS6 88 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 C1orf220Q5T0J3 134 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 Q6AWC8 147 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 HBMQ6B0K9 141 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 GOLT1AQ6ZVE7 132 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 FAM231DQ6ZW35 169 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 OOSP2Q86WS3 158 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ZNF695Q8IW36 515 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 SLC35F2Q8IXU6 374 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 C1orf158Q8N1D5 194 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TMEM86AQ8N2M4 240 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 OR8G5Q8NG78 346 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 OR11H6Q8NGC7 330 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 OR8B12Q8NGG6 310 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 OR4C16Q8NGL9 310 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 OR5AR1Q8NGP9 310 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 VSTM2AQ8TAG5 236 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 CNIH3Q8TBE1 160 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms