RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 TGFAP01135 160 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 CHD2O14647 1828 aaKnown RBP4.92□□□□□ -1.62
USF3-204ENST00000496826 NFAT5O94916 1531 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 ADM5C9JUS6 153 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 GASTP01350 101 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 PRR4Q16378 134 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 ZNF493Q6ZR52 646 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 Q6ZVH6 145 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 MRPL53Q96EL3 112 aaKnown RBP4.92□□□□□ -1.62
USF3-204ENST00000496826 LMO7Q8WWI1 1683 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 ABCA7Q8IZY2 2146 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 C9JAW5 83 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 RPL36A-HNRNPH2H7BZ11 118 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 PSG7Q13046 419 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 ZNF488Q96MN9 340 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 SNURFQ9Y675 71 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 FREM1Q5H8C1 2179 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 TRIP12Q14669 1992 aaPredicted RBP4.92□□□□□ -1.62
USF3-204ENST00000496826 A0A087WWC5 75 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 A0A0D9SEW6 157 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 LMO7DNF2Z398 122 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 J3KTA2 159 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 YPEL4Q96NS1 127 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 NABP2Q9BQ15 211 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 IL36BQ9NZH7 164 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 SIGLEC7Q9Y286 467 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 PRSS21Q9Y6M0 314 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 TRAV14DV4A0A0A6YYC5 116 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 K7EMI3 77 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 ZNF250P15622 560 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 CCL18P55774 89 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 ZNF117Q03924 483 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 COLCA1Q6ZS62 124 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 BCL6BQ8N143 479 aaPredicted RBP4.92□□□□□ -1.62
USF3-204ENST00000496826 LINC00479Q96M42 142 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 SLC25A53Q5H9E4 307 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 CNRIP1Q96F85 164 aaPredicted RBP4.91□□□□□ -1.62
USF3-204ENST00000496826 MBNL3Q9NUK0 354 aaKnown RBP4.91□□□□□ -1.62
USF3-204ENST00000496826 HECW2Q9P2P5 1572 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 NUP214P35658 2090 aaPredicted RBP4.91□□□□□ -1.62
USF3-204ENST00000496826 NDUFB4O95168 129 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 NBEAP1P0C6P0 100 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 MAP3K4Q9Y6R4 1608 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 TRBV7-1A0A0A6YYK4 115 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 LTAP01374 205 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 TRIP6Q15654 476 aaKnown RBP4.91□□□□□ -1.62
USF3-204ENST00000496826 ATP5EP2Q5VTU8 51 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 C20orf204Q6ZNR8 217 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 TNS2Q63HR2 1409 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 CR1LQ2VPA4 569 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 CYP2G1PQ6ZSU1 146 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 TULP4Q9NRJ4 1543 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 ATG2BQ96BY7 2078 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 FREM3P0C091 2139 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 CTRLP40313 264 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 PGFP49763 221 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 FABP5Q01469 135 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 SPATA46Q5T0L3 261 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 XAF1Q6GPH4 301 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 KIF26BQ2KJY2 2108 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 ZDBF2Q9HCK1 2354 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 BUB1B-PAK6H3BSN5 160 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 SMIM8Q96KF7 97 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 KLK13Q9UKR3 277 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 SRRM4A7MD48 611 aaKnown RBP4.91□□□□□ -1.62
USF3-204ENST00000496826 NSUN5P1Q3KNT7 163 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 ZFP2Q6ZN57 461 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 C7orf33Q8WU49 177 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 TMEM255BQ8WV15 326 aa4.91□□□□□ -1.62
USF3-204ENST00000496826 DLG5Q8TDM6 1919 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 ZFPL1O95159 310 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 MPZP25189 248 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 PEBP1P30086 187 aaKnown RBP4.9□□□□□ -1.62
USF3-204ENST00000496826 UBE2D1P51668 147 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 HIKESHIQ53FT3 197 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 TMEFF1Q8IYR6 380 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 SLIT3O75094 1523 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 HILPDAQ9Y5L2 63 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 A4D1N5 150 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 SAP30O75446 220 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 C16orf54Q6UWD8 224 aa4.9□□□□□ -1.62
USF3-204ENST00000496826 MUC4Q99102 2169 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 NTN3O00634 580 aaPredicted RBP4.9□□□□□ -1.63
USF3-204ENST00000496826 SMAD7O15105 426 aaKnown RBP4.9□□□□□ -1.63
USF3-204ENST00000496826 HLA-DMBP28068 263 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 C9orf139Q6ZV77 190 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 RNF152Q8N8N0 203 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 WNT2BQ93097 391 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 FBXL7Q9UJT9 491 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 ZNFX1Q9P2E3 1918 aaKnown RBP4.9□□□□□ -1.63
USF3-204ENST00000496826 TET3O43151 1660 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 HEATR5AQ86XA9 2040 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 FRMPD1Q5SYB0 1578 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 NDUFB8O95169 186 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 PHRF1Q9P1Y6 1649 aaKnown RBP4.9□□□□□ -1.63
USF3-204ENST00000496826 YLPM1P49750 1951 aaKnown RBP4.9□□□□□ -1.63
USF3-204ENST00000496826 A0A0U1RQV5 110 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 A0A1B0GUS0 222 aa4.9□□□□□ -1.63
USF3-204ENST00000496826 SPRY1O43609 319 aaPredicted RBP4.9□□□□□ -1.63
USF3-204ENST00000496826 WNT2P09544 360 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms