RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 DAPK2Q9UIK4 370 aa10.09□□□□□ -0.79
PRPF40A-211ENST00000493468 TMED3Q9Y3Q3 217 aa10.09□□□□□ -0.79
PRPF40A-211ENST00000493468 RFNGQ9Y644 331 aa10.09□□□□□ -0.79
PRPF40A-211ENST00000493468 H3BMM0 161 aa10.08□□□□□ -0.8
PRPF40A-211ENST00000493468 DHRS2Q13268 280 aa10.08□□□□□ -0.8
PRPF40A-211ENST00000493468 YTHDF1Q9BYJ9 559 aaKnown RBP10.08□□□□□ -0.8
PRPF40A-211ENST00000493468 RHBDL2Q9NX52 303 aa10.08□□□□□ -0.8
PRPF40A-211ENST00000493468 AP2S1P53680 142 aaPredicted RBP10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 EMP1P54849 157 aa10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 SNRPD3P62318 126 aaKnown RBP10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 ERHP84090 104 aaKnown RBP10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 TBCEQ15813 527 aaPredicted RBP10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 FAM222AQ5U5X8 452 aa10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 TMEM88Q6PEY1 159 aa10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 CMTM1Q8IZ96 169 aa10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 LGALS14Q8TCE9 139 aa10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 U3KQE9 123 aa10.07□□□□□ -0.8
PRPF40A-211ENST00000493468 A0A0A6YYH2 397 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 A6NJ64 397 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 INS-IGF2F8WCM5 200 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 CORTO00230 105 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 SCGB2A1O75556 95 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 HLA-DRB4P13762 266 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 CBX5P45973 191 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 SCAND1P57086 179 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 HSPE1P61604 102 aaKnown RBP10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 C22orf42Q6IC83 251 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 DHRS11Q6UWP2 260 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 SPATA12Q7Z6I5 190 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 OR4A16Q8NH70 328 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 ZNRF2Q8NHG8 242 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 GLMPQ8WWB7 406 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 SEC22AQ96IW7 307 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 VCXQ9H320 206 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 HLA-DRB4X5D2U9 266 aa10.06□□□□□ -0.8
PRPF40A-211ENST00000493468 TRAV18A0A075B6X5 111 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 SMIM30A4D0T7 59 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 EPM2AB3EWF7 344 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 FAM90A26D6RGX4 464 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 CLN5O75503 358 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 HTN3P15516 51 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 HOXA1P49639 335 aaPredicted RBP10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 PPP5CP53041 499 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 C16orf54Q6UWD8 224 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 ATG101Q9BSB4 218 aa10.05□□□□□ -0.8
PRPF40A-211ENST00000493468 MYCBP2O75592 4640 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 GPR31O00270 319 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 ALDH3B2P48448 385 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 H2BFWTQ7Z2G1 175 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 OR4X1Q8NH49 305 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 SLC25A38Q96DW6 304 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 CLUHP3Q96NS8 147 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 AUNIPQ9H7T9 357 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 NRN1Q9NPD7 142 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 EHFQ9NZC4 300 aa10.04□□□□□ -0.8
PRPF40A-211ENST00000493468 SNCAP37840 140 aa10.03□□□□□ -0.8
PRPF40A-211ENST00000493468 NKX2-1P43699 371 aaPredicted RBP10.03□□□□□ -0.8
PRPF40A-211ENST00000493468 SFXN4Q6P4A7 337 aa10.03□□□□□ -0.8
PRPF40A-211ENST00000493468 TMEM230Q96A57 120 aa10.03□□□□□ -0.8
PRPF40A-211ENST00000493468 ZNF2Q9BSG1 426 aaPredicted RBP10.03□□□□□ -0.8
PRPF40A-211ENST00000493468 FXYD6Q9H0Q3 95 aa10.03□□□□□ -0.8
PRPF40A-211ENST00000493468 TRAV30A0A087WSZ9 112 aa10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 IGKV1-17P01599 117 aa10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 HNRNPCP07910 306 aaKnown RBP eCLIP10.02□□□□□ -0.814e-6■■■□□ 18.4
PRPF40A-211ENST00000493468 INAFM2P0DMQ5 153 aa10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 RPL5P46777 297 aaKnown RBP10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 FNDC4Q9H6D8 234 aaPredicted RBP10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 MRPL36Q9P0J6 103 aaKnown RBP10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 RRP15Q9Y3B9 282 aaKnown RBP10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 YTHDF2Q9Y5A9 579 aaKnown RBP10.02□□□□□ -0.81
PRPF40A-211ENST00000493468 IGHV3OR16-12A0A075B7B8 117 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 IGKV1-39P01597 117 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 IGKV1D-39P04432 117 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 FCER2P06734 321 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 RNASE2P10153 161 aaKnown RBP10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 BTF3P20290 206 aaKnown RBP10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 SUB1P53999 127 aaKnown RBP eCLIP10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 DAD1P61803 113 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 GSG1LQ6UXU4 331 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 ZNF709Q8N972 641 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 TXNL4BQ9NX01 149 aaKnown RBP10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 ANAPC10Q9UM13 185 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 VPS13BQ7Z7G8 4022 aa10.01□□□□□ -0.81
PRPF40A-211ENST00000493468 FAT1Q14517 4588 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 LOC102723971A0A1B0GUV8 181 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 HBE1P02100 147 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 S100GP29377 79 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 OPRK1P41145 380 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 RFX2P48378 723 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 TAS2R46P59540 309 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 SLC35G3Q8N808 338 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 MRGPRFQ96AM1 343 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 IFT46Q9NQC8 304 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 DIABLOQ9NR28 239 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 GOLT1BQ9Y3E0 138 aa10□□□□□ -0.81
PRPF40A-211ENST00000493468 KRTAP10-2P60368 255 aa9.99□□□□□ -0.81
PRPF40A-211ENST00000493468 TIGITQ495A1 244 aa9.99□□□□□ -0.81
PRPF40A-211ENST00000493468 SPINK9Q5DT21 86 aa9.99□□□□□ -0.81
PRPF40A-211ENST00000493468 GDF5OSQ5U4N7 250 aa9.99□□□□□ -0.81
PRPF40A-211ENST00000493468 SIGLEC15Q6ZMC9 328 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms