RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 E7EUB6 86 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 GOSR2O14653 212 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 SYNGR2O43760 224 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 P0C879 139 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 PPIFP30405 207 aaKnown RBP6.74□□□□□ -1.33
USP4-213ENST00000488520 HTR2BP41595 481 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 ATP5IP56385 69 aaPredicted RBP6.74□□□□□ -1.33
USP4-213ENST00000488520 NDPQ00604 133 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 TNFRSF9Q07011 255 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 OXA1LQ15070 435 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 MRGPRG-AS1Q2M3A8 158 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 SPINK9Q5DT21 86 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 C9orf66Q5T8R8 295 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 ZBTB8BQ8NAP8 495 aaPredicted RBP6.74□□□□□ -1.33
USP4-213ENST00000488520 DTD1Q8TEA8 209 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 RCHY1Q96PM5 261 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 RBKSQ9H477 322 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 FBXO7Q9Y3I1 522 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 ALG5Q9Y673 324 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 U3KQ87 197 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 DNAH1Q9P2D7 4330 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 C9orf118A6NHY6 69 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 FAM223BA6NKX1 122 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 SEC14L6B5MCN3 397 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 CCSO14618 274 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 SCGB2A1O75556 95 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 OR2J3O76001 311 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 IFNA4P05014 189 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 CRYGCP07315 174 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 LYL1P12980 280 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 AREGP15514 252 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 CTRB1P17538 263 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 CDX1P47902 265 aaPredicted RBP6.73□□□□□ -1.33
USP4-213ENST00000488520 FAM209BQ5JX69 171 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 ZFAND6Q6FIF0 208 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 CTRB2Q6GPI1 263 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 SBSPONQ8IVN8 264 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 FAM223AQ8IWN6 122 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 OR2C3Q8N628 320 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 NECAP1Q8NC96 275 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 OR10C1Q96KK4 312 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 CXorf58Q96LI9 332 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 UBE2E2Q96LR5 201 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 MAGT1Q9H0U3 335 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 MGAT4CQ9UBM8 478 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 HSPB7Q9UBY9 170 aa6.73□□□□□ -1.33
USP4-213ENST00000488520 BIRC6Q9NR09 4857 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 LCE6AA0A183 80 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 RPS10-NUDT3A0A1W2PQS6 291 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 IGLC7A0M8Q6 106 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 CORTO00230 105 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 PITX3O75364 302 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 BRI3O95415 125 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 SIX6O95475 246 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 PRH1P02810 166 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 OR8U8P0C7N1 319 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 IAPPP10997 89 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 PSMB8P28062 276 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 BCAP31P51572 246 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 S100A10P60903 97 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 SSBP2P81877 361 aaPredicted RBP6.72□□□□□ -1.33
USP4-213ENST00000488520 RHOGP84095 191 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 CFHR3Q02985 330 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 WT1-ASQ06250 92 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 ASPHD1Q5U4P2 390 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 ETFRF1Q6IPR1 90 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 ZNF491Q8N8L2 437 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 OR1P1Q8NH06 330 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 EEF1AKMT3Q96AZ1 226 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 PINX1Q96BK5 328 aaKnown RBP6.72□□□□□ -1.33
USP4-213ENST00000488520 RAB40CQ96S21 281 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 NMES1Q9C002 83 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 PSENENQ9NZ42 101 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 ZNF256Q9Y2P7 627 aaPredicted RBP6.72□□□□□ -1.33
USP4-213ENST00000488520 STRAPQ9Y3F4 350 aaKnown RBP6.72□□□□□ -1.33
USP4-213ENST00000488520 LSM5Q9Y4Y9 91 aaKnown RBP6.72□□□□□ -1.33
USP4-213ENST00000488520 F11RQ9Y624 299 aaKnown RBP6.72□□□□□ -1.33
USP4-213ENST00000488520 HYDINQ4G0P3 5121 aa6.72□□□□□ -1.33
USP4-213ENST00000488520 TRBV7-1A0A0A6YYK4 115 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 C7orf66A4D0T2 115 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 CGB1A6NKQ9 187 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 MPTX1A8MV57 137 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 INS-IGF2F8WCM5 200 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 SSSCA1O60232 199 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 PET100P0DJ07 73 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 NUP62P37198 522 aaPredicted RBP6.71□□□□□ -1.34
USP4-213ENST00000488520 POLR2GP62487 172 aaKnown RBP eCLIP6.71□□□□□ -1.34
USP4-213ENST00000488520 EXOSC2Q13868 293 aaKnown RBP6.71□□□□□ -1.34
USP4-213ENST00000488520 AARDQ4LEZ3 155 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 SPANXN5Q5MJ07 72 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 ADAMTSL5Q6ZMM2 481 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 OR4D5Q8NGN0 318 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 SMIM8Q96KF7 97 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 OR5B12Q96R08 314 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 KLK15Q9H2R5 256 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 RANGRFQ9HD47 186 aaPredicted RBP6.71□□□□□ -1.34
USP4-213ENST00000488520 SMAD5-AS1Q9Y6J3 95 aa6.71□□□□□ -1.34
USP4-213ENST00000488520 STARD9Q9P2P6 4700 aa6.7□□□□□ -1.34
USP4-213ENST00000488520 SOX15O60248 233 aa6.7□□□□□ -1.34
USP4-213ENST00000488520 NDUFB8O95169 186 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms