RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 TM2D3Q9BRN9 247 aa10.41□□□□□ -0.74
SYNE1-226ENST00000488376 RBKSQ9H477 322 aa10.41□□□□□ -0.74
SYNE1-226ENST00000488376 C15orf62A8K5M9 175 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 OR11H12B2RN74 326 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 SFT2D2O95562 160 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 TMEM50AO95807 157 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 APOHP02749 345 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-226ENST00000488376 IL7P13232 177 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 RELQ04864 619 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-226ENST00000488376 TNFRSF9Q07011 255 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 SMCO1Q147U7 214 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 TOMM20LQ6UXN7 152 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 LINC00322Q6ZN03 302 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-226ENST00000488376 DUSP18Q8NEJ0 188 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 SLC24A4Q8NFF2 622 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 DEDD2Q8WXF8 326 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 OR10C1Q96KK4 312 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 WWC2-AS2Q96NR7 200 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 CITED4Q96RK1 184 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 SLC25A21Q9BQT8 299 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-226ENST00000488376 TUBA4BQ9H853 241 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 ZFAND3Q9H8U3 227 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 RETNQ9HD89 108 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 NDUFA13Q9P0J0 144 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 HSPB7Q9UBY9 170 aa10.4□□□□□ -0.74
SYNE1-226ENST00000488376 TENM3Q9P273 2699 aa10.4□□□□□ -0.75
SYNE1-226ENST00000488376 IGHV7-4-1A0A0J9YVY3 117 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 K7EMT4 169 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 CHEK1O14757 476 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 NDUFB6O95139 128 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 ANXA3P12429 323 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 HTR2BP41595 481 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 SUB1P53999 127 aaKnown RBP eCLIP10.39□□□□□ -0.75
SYNE1-226ENST00000488376 RBMS2Q15434 407 aaKnown RBP10.39□□□□□ -0.75
SYNE1-226ENST00000488376 C2orf83Q53S99 150 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 CENPSQ8N2Z9 138 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 LILRB2Q8N423 598 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 OR52B4Q8NGK2 314 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 RNF2Q99496 336 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 SRD5A3Q9H8P0 318 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 GAR1Q9NY12 217 aaKnown RBP10.39□□□□□ -0.75
SYNE1-226ENST00000488376 SMPXQ9UHP9 88 aa10.39□□□□□ -0.75
SYNE1-226ENST00000488376 PUS1Q9Y606 427 aaKnown RBP eCLIP10.39□□□□□ -0.75
SYNE1-226ENST00000488376 HUWE1Q7Z6Z7 4374 aaKnown RBP10.38□□□□□ -0.75
SYNE1-226ENST00000488376 IGHV3-66A0A0C4DH42 116 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 CORTO00230 105 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 PLA2G10O15496 165 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 PITX3O75364 302 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 CLN5O75503 358 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 IGKV1-17P01599 117 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 NPBWR1P48145 328 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 INPP1P49441 399 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 SRPXP78539 464 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 TIGITQ495A1 244 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 PRSS54Q6PEW0 395 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 RBPMS2Q6ZRY4 209 aaKnown RBP10.38□□□□□ -0.75
SYNE1-226ENST00000488376 LRTM2Q8N967 370 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 TMEM116Q8NCL8 245 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 OR4X1Q8NH49 305 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 OR1S1Q8NH92 325 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 DTD1Q8TEA8 209 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 RHPN1-AS1Q9BWJ2 59 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 UBQLN2Q9UHD9 624 aa10.38□□□□□ -0.75
SYNE1-226ENST00000488376 TRAV25A0A0B4J276 109 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 MPTX1A8MV57 137 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 TSPAN4O14817 238 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 ADAP1O75689 374 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 HOXB5P09067 269 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 ANXA7P20073 488 aaKnown RBP10.37□□□□□ -0.75
SYNE1-226ENST00000488376 NPY1RP25929 384 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 RND2P52198 227 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 ST8SIA2Q92186 375 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 STAB2Q8WWQ8 2551 aa10.37□□□□□ -0.75
SYNE1-226ENST00000488376 IGKV3-7A0A075B6H7 116 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 TRAV14DV4A0A0A6YYC5 116 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 C9orf170A2RU37 121 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 NAP1L6A6NFF2 107 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 IFNA10P01566 189 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 IGLC1P0CG04 106 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 IAPPP10997 89 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 ODF3L2Q3SX64 289 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 GGNBP1Q5YKI7 109 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 ZNF600Q6ZNG1 722 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 SLC16A13Q7RTY0 426 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 SPAG8Q99932 426 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-226ENST00000488376 FAM110AQ9BQ89 295 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 MAGT1Q9H0U3 335 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 HIPK2Q9H2X6 1198 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 ZMAT4Q9H898 229 aa10.36□□□□□ -0.75
SYNE1-226ENST00000488376 DUXBA0A1W2PPF3 345 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 A6NHS1 94 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 TFPI2P48307 235 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 UBE2MP61081 183 aaKnown RBP10.35□□□□□ -0.75
SYNE1-226ENST00000488376 DHRS2Q13268 280 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 ZNF124Q15973 351 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 CNPY1Q3B7I2 92 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 FAM90A2PQ658T7 463 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 RNASEH2CQ8TDP1 164 aaKnown RBP10.35□□□□□ -0.75
SYNE1-226ENST00000488376 NPIPB3Q92617 1050 aa10.35□□□□□ -0.75
SYNE1-226ENST00000488376 ACY3Q96HD9 319 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms