RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MRPL36Q9P0J6 103 aaKnown RBP11.75□□□□□ -0.53
HMGA1-206ENST00000478214 MRPL27Q9P0M9 148 aaKnown RBP11.75□□□□□ -0.53
HMGA1-206ENST00000478214 HSPB7Q9UBY9 170 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 CACFD1Q9UGQ2 172 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 PIGBOS1A0A0B4J2F0 54 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 FRMD6-AS1P0C7T7 363 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 IGHV4-30-4P0DP06 118 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 OPRK1P41145 380 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 UBE2MP61081 183 aaKnown RBP11.74□□□□□ -0.53
HMGA1-206ENST00000478214 RELQ04864 619 aaPredicted RBP11.74□□□□□ -0.53
HMGA1-206ENST00000478214 GUCA2BQ16661 112 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 C2orf83Q53S99 150 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 GTSCR1Q86UQ5 136 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 TMEM61Q8N0U2 210 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 SLC24A4Q8NFF2 622 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 HIPK2Q9H2X6 1198 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 RBKSQ9H477 322 aa11.74□□□□□ -0.53
HMGA1-206ENST00000478214 HUWE1Q7Z6Z7 4374 aaKnown RBP11.74□□□□□ -0.53
HMGA1-206ENST00000478214 C9orf170A2RU37 121 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 PITX3O75364 302 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 YIF1AO95070 293 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 TMEM50AO95807 157 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 HOXB5P09067 269 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 CD7P09564 240 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 ANXA7P20073 488 aaKnown RBP11.73□□□□□ -0.53
HMGA1-206ENST00000478214 LINC00299Q6ZSB3 139 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 SBSPONQ8IVN8 264 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 DTD1Q8TEA8 209 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 TMED3Q9Y3Q3 217 aa11.73□□□□□ -0.53
HMGA1-206ENST00000478214 C15orf62A8K5M9 175 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 K7EMT4 169 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 LYRM1O43325 122 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 SCAF4O95104 1147 aaKnown RBP11.72□□□□□ -0.53
HMGA1-206ENST00000478214 OR4E1P0C645 316 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 NHLRC4P0CG21 123 aaPredicted RBP11.72□□□□□ -0.53
HMGA1-206ENST00000478214 NPY1RP25929 384 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 CD81P60033 236 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 DHRS2Q13268 280 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 OR4X1Q8NH49 305 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 NEURL2Q9BR09 285 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 CCDC32Q9BV29 185 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 C19orf73Q9NVV2 129 aa11.72□□□□□ -0.53
HMGA1-206ENST00000478214 RPS10-NUDT3A0A1W2PQS6 291 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 CLN5O75503 358 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 IFNA10P01566 189 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 SLC25A6P12236 298 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 GGNBP1Q5YKI7 109 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 TOMM20LQ6UXN7 152 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 LYG2Q86SG7 212 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 RNASEH2CQ8TDP1 164 aaKnown RBP11.71□□□□□ -0.53
HMGA1-206ENST00000478214 OR10C1Q96KK4 312 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 PTTG2Q9NZH5 202 aa11.71□□□□□ -0.53
HMGA1-206ENST00000478214 IGHV3-49A0A0A0MS15 119 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 A8MZ25 164 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 ADAP1O75689 374 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 C4orf46Q504U0 113 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 PRSS54Q6PEW0 395 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 ZNF600Q6ZNG1 722 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 RBPMS2Q6ZRY4 209 aaKnown RBP11.7□□□□□ -0.54
HMGA1-206ENST00000478214 NOXA1Q86UR1 476 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 S100ZQ8WXG8 99 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 WFDC10AQ9H1F0 79 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 C20orf85Q9H1P6 137 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 SMPXQ9UHP9 88 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 PUS1Q9Y606 427 aaKnown RBP eCLIP11.7□□□□□ -0.54
HMGA1-206ENST00000478214 U3KQ87 197 aa11.7□□□□□ -0.54
HMGA1-206ENST00000478214 TRAV25A0A0B4J276 109 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 IGHV7-4-1A0A0J9YVY3 117 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 IGKV1-17P01599 117 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 IAPPP10997 89 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 SLC25A4P12235 298 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 RND2P52198 227 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 TIGITQ495A1 244 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 DEFB125Q8N687 156 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 COQ8AQ8NI60 647 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 MAGT1Q9H0U3 335 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 TUBA4BQ9H853 241 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 ZFAND3Q9H8U3 227 aa11.69□□□□□ -0.54
HMGA1-206ENST00000478214 IGHV3OR16-13A0A075B7E8 117 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 TRAV14DV4A0A0A6YYC5 116 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 IGHV3-74A0A0B4J1X5 117 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 MPTX1A8MV57 137 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 FAM90A26D6RGX4 464 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 CHEK1O14757 476 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 TCRBP04435 133 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 SLC16A13Q7RTY0 426 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 TMEM116Q8NCL8 245 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 OR52B4Q8NGK2 314 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 RHPN1-AS1Q9BWJ2 59 aa11.68□□□□□ -0.54
HMGA1-206ENST00000478214 TRAV6A0A075B6T7 132 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 OR11H12B2RN74 326 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 TSPAN4O14817 238 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 IFNA4P05014 189 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 IGLC1P0CG04 106 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 LAMTOR1Q6IAA8 161 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 ETFRF1Q6IPR1 90 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 NPIPB3Q92617 1050 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 ACY3Q96HD9 319 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 RNF2Q99496 336 aa11.67□□□□□ -0.54
HMGA1-206ENST00000478214 GINS3Q9BRX5 216 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms