RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 PDLIM4P50479 330 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 RPL23P62829 140 aaKnown RBP6.08□□□□□ -1.44
COL6A3-208ENST00000468792 SSBP2P81877 361 aaPredicted RBP6.08□□□□□ -1.44
COL6A3-208ENST00000468792 ELOBQ15370 118 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 TNXAQ16473 311 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 FAM78BQ5VT40 261 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 ZNF562Q6V9R5 426 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 SRSF12Q8WXF0 261 aaKnown RBP6.08□□□□□ -1.44
COL6A3-208ENST00000468792 RPUSD4Q96CM3 377 aaKnown RBP6.08□□□□□ -1.44
COL6A3-208ENST00000468792 BTF3L4Q96K17 158 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 ZNF48Q96MX3 618 aaPredicted RBP6.08□□□□□ -1.44
COL6A3-208ENST00000468792 IMMP2LQ96T52 175 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 PYGO2Q9BRQ0 406 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 C20orf24Q9BUV8 137 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 LPAR2Q9HBW0 351 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 BIN3Q9NQY0 253 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 TPSG1Q9NRR2 321 aa6.08□□□□□ -1.44
COL6A3-208ENST00000468792 IGHV3-72A0A0B4J1Y9 119 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 NPIPB5A8MRT5 1133 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 C9JCJ5 164 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 PPP1R2P9O14990 202 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 HMGB3O15347 200 aaKnown RBP6.07□□□□□ -1.44
COL6A3-208ENST00000468792 HOXB4P17483 251 aaPredicted RBP6.07□□□□□ -1.44
COL6A3-208ENST00000468792 NPPCP23582 126 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 AKR1C3P42330 323 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 CEBPGP53567 150 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 BPIFB3P59826 476 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 MLANAQ16655 118 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 C5orf64Q2M2E5 130 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 C10orf55Q5SWW7 151 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 VMO1Q7Z5L0 202 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 FAM24BQ8N5W8 94 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 OR4X1Q8NH49 305 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 OR2T6Q8NHC8 308 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 TMEM37Q8WXS4 190 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 NPIPB3Q92617 1050 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 EAF1Q96JC9 268 aaPredicted RBP6.07□□□□□ -1.44
COL6A3-208ENST00000468792 FAM167A-AS1Q96KT0 104 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 UHRF2Q96PU4 802 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 C1RLQ9NZP8 487 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 FLNCQ14315 2725 aa6.07□□□□□ -1.44
COL6A3-208ENST00000468792 VWC2LB2RUY7 222 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 I3L2K1 104 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 IGHV4-39P01824 125 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 FABP1P07148 127 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 PFN1P07737 140 aaKnown RBP6.06□□□□□ -1.44
COL6A3-208ENST00000468792 CNTFRP26992 372 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 MFAP2P55001 183 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 LGALS4P56470 323 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 DSCR9P59020 149 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 GNB1P62873 340 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 PAX8Q06710 450 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 MMDQ15546 238 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 AKIRIN2Q53H80 203 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 CST9LP1Q5W188 147 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 MIR17HGQ75NE6 70 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 LINC01551Q86U37 167 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 ISOC2Q96AB3 205 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 ZNF503Q96F45 646 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 ACY3Q96HD9 319 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 BPESC1Q9GZL8 116 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 FBXL15Q9H469 300 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 TNFRSF19Q9NS68 423 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 ASH1LQ9NR48 2969 aaKnown RBP6.06□□□□□ -1.44
COL6A3-208ENST00000468792 NAV3Q8IVL0 2385 aa6.06□□□□□ -1.44
COL6A3-208ENST00000468792 COL12A1Q99715 3063 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 USP24Q9UPU5 2620 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 TRAV30A0A087WSZ9 112 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 FCN1O00602 326 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 COX7A2P2O60397 106 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 NDUFS7O75251 213 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 TOX4O94842 621 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 NDUFB4O95168 129 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 FAM106CPP0CH98 169 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 DEFA4P12838 97 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 FCGR2BP31994 310 aaPredicted RBP6.05□□□□□ -1.44
COL6A3-208ENST00000468792 BRS3P32247 399 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 SRP14P37108 136 aaKnown RBP6.05□□□□□ -1.44
COL6A3-208ENST00000468792 ATP5G3P48201 142 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 DLX1P56177 255 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 LCN2P80188 198 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 FOXL1Q12952 345 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 PLGLAQ15195 96 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 C10orf113Q5VZT2 155 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 SPATA31B1PQ5VZV4 182 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 PATE2Q6UY27 113 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 LHFPL4Q7Z7J7 247 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 S100A7AQ86SG5 101 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 IQCF2Q8IXL9 164 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 TTC9CQ8N5M4 171 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 OR51G1Q8NGK1 321 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 C10orf105Q8TEF2 133 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 Q8WTZ3 238 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 PERPQ96FX8 193 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 AJUBAQ96IF1 538 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 TMEM68Q96MH6 324 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 TBX15Q96SF7 602 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 PIMREGQ9BSJ6 248 aa6.05□□□□□ -1.44
COL6A3-208ENST00000468792 YTHDF2Q9Y5A9 579 aaKnown RBP6.05□□□□□ -1.44
COL6A3-208ENST00000468792 USP9XQ93008 2570 aaPredicted RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms