RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TEX36Q5VZQ5 186 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 TMEM167AQ8TBQ9 72 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 SNURFLB1AK76 121 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 MGPP08493 103 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 MFAP2P55001 183 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 MIR17HGQ75NE6 70 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 SPG11Q96JI7 2443 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 TRAV41A0A0B4J266 112 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 ISLRO14498 428 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 CRISP2P16562 243 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 ADORA2A-AS1P86434 159 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 C5orf64Q2M2E5 130 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 PARLQ9H300 379 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 IGHV3OR16-12A0A075B7B8 117 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 LOXP28300 417 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-213ENST00000448038 ITGB1BP1O14713 200 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF253O75346 499 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 DMRTC2Q8IXT2 367 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-213ENST00000448038 NIT2Q9NQR4 276 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 HIST1H1AQ02539 215 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-213ENST00000448038 FAM71F2Q6NXP2 309 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 OR1P1Q8NH06 330 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 ARL2-SNX15V9GYD0 113 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 IGKV1-16P04430 117 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 PVRIGQ6DKI7 326 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF705AQ6ZN79 300 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-213ENST00000448038 PUSL1Q8N0Z8 303 aaKnown RBP6.05□□□□□ -1.44
SYNE1-213ENST00000448038 SIGLEC9Q9Y336 463 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 TCRBV4S1A1TA0A5B7 111 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 IGKV3-20P01619 116 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 HLA-DRB1P01911 266 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 GPX1P07203 203 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 MYOD1P15172 320 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 RELBQ01201 579 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 C11orf44Q8N8P7 122 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 DDB2Q92466 427 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 RAX2Q96IS3 184 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 Q96MF0 132 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 NCOR1P1Q9H4R4 102 aa6.05□□□□□ -1.44
SYNE1-213ENST00000448038 NDUFS7O75251 213 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 AGAP20933 346 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 RPL29P47914 159 aaKnown RBP6.04□□□□□ -1.44
SYNE1-213ENST00000448038 CENPFP49454 3210 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF506Q5JVG8 444 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF600Q6ZNG1 722 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 BEND2Q8NDZ0 799 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 RNF125Q96EQ8 232 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 PLCE1Q9P212 2302 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 WDR83OSQ9Y284 106 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 SHANK1Q9Y566 2161 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 PCNX3Q9H6A9 2034 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 FOXI3A8MTJ6 420 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-213ENST00000448038 TMEM250H0YL14 139 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 GATA3P23771 443 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 SNRPEP62304 92 aaKnown RBP6.04□□□□□ -1.44
SYNE1-213ENST00000448038 TWIST1Q15672 202 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 C17orf58Q2M2W7 97 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 C2orf83Q53S99 150 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 HIST1H2BAQ96A08 127 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 WFDC1Q9HC57 220 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 DLX1P56177 255 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 CX3CL1P78423 397 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 RUSC1-AS1Q66K80 236 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 TRAV34A0A0B4J273 112 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 A0A0G2JRQ6 117 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 TSPOP30536 169 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 UBE2E1P51965 193 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 KRTAP27-1Q3LI81 207 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 GOLT1BQ9Y3E0 138 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 IGHV2-70DA0A0C4DH43 119 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 APCSP02743 223 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 FAM3BP58499 235 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-213ENST00000448038 CENPWQ5EE01 88 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 LHFPL4Q7Z7J7 247 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 ANAPC10Q9UM13 185 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 ANKHD1Q8IWZ3 2542 aaKnown RBP6.04□□□□□ -1.44
SYNE1-213ENST00000448038 IGF2RP11717 2491 aa6.04□□□□□ -1.44
SYNE1-213ENST00000448038 WDR87Q6ZQQ6 2873 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 C15orf32Q32M92 178 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF585BQ52M93 769 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 FAM53AQ6NSI3 398 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-213ENST00000448038 RNF166Q96A37 237 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-213ENST00000448038 AMTP48728 403 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 CD81P60033 236 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 PMS2P11Q13670 270 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 KLF17Q5JT82 389 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-213ENST00000448038 LEMD1Q68G75 181 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 TREML4Q6UXN2 200 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 C11orf53Q8IXP5 236 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 PEMTQ9UBM1 199 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 NCOA6Q14686 2063 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-213ENST00000448038 MDKP21741 143 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-213ENST00000448038 Q6ZRM9 215 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 ITLN2Q8WWU7 325 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-213ENST00000448038 PRORYQ9H606 182 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 PSMB11A5LHX3 300 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 ANOS1P23352 680 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 ATP5G3P48201 142 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 SAPCD1Q5SSQ6 148 aa6.03□□□□□ -1.44
SYNE1-213ENST00000448038 DGAT2L7PQ6IED9 249 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 1728.4 ms