RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SMCO1Q147U7 214 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 BSXQ3C1V8 233 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 NMSQ5H8A3 153 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 LAMTOR1Q6IAA8 161 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 CENPSQ8N2Z9 138 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 HIPK2Q9H2X6 1198 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 HUWE1Q7Z6Z7 4374 aaKnown RBP11.42□□□□□ -0.58
LIMS3-201ENST00000437679 DUXBA0A1W2PPF3 345 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 RPS10-NUDT3A0A1W2PQS6 291 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 CENPXA8MT69 81 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 OR11H12B2RN74 326 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 SCGB2A1O75556 95 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 NXPH3O95157 252 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 NOXA1Q86UR1 476 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 SLC24A4Q8NFF2 622 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 OR52B4Q8NGK2 314 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 STAB2Q8WWQ8 2551 aa11.42□□□□□ -0.58
LIMS3-201ENST00000437679 A0A1B0GU03 582 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 LINC00854A0A1B0GVQ3 168 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 SFT2D2O95562 160 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 TMEM50AO95807 157 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 TNFRSF9Q07011 255 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 C2orf83Q53S99 150 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 DEFB125Q8N687 156 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 OR1S1Q8NH92 325 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 RCHY1Q96PM5 261 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 GINS3Q9BRX5 216 aa11.41□□□□□ -0.58
LIMS3-201ENST00000437679 FNDC4Q9H6D8 234 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-201ENST00000437679 TRAV14DV4A0A0A6YYC5 116 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 CLN5O75503 358 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 NDUFB6O95139 128 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 NPY1RP25929 384 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 UBE2MP61081 183 aaKnown RBP11.4□□□□□ -0.58
LIMS3-201ENST00000437679 PPP1R1AQ13522 171 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 ZNF600Q6ZNG1 722 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 LRTM2Q8N967 370 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 TMEM116Q8NCL8 245 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 OR4X1Q8NH49 305 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 RNASEH2CQ8TDP1 164 aaKnown RBP11.4□□□□□ -0.58
LIMS3-201ENST00000437679 OR10C1Q96KK4 312 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 SDHCQ99643 169 aaPredicted RBP11.4□□□□□ -0.58
LIMS3-201ENST00000437679 SPAG8Q99932 426 aaPredicted RBP11.4□□□□□ -0.58
LIMS3-201ENST00000437679 C7orf50Q9BRJ6 194 aaKnown RBP11.4□□□□□ -0.58
LIMS3-201ENST00000437679 TM2D3Q9BRN9 247 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 HSPB7Q9UBY9 170 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 SMPXQ9UHP9 88 aa11.4□□□□□ -0.58
LIMS3-201ENST00000437679 TRAV30A0A087WSZ9 112 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 IGHV7-4-1A0A0J9YVY3 117 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 TSPAN4O14817 238 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 IFNA10P01566 189 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 IL7P13232 177 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 BMI1P35226 326 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 MLANAQ16655 118 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 HAGHQ16775 308 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 TOMM20LQ6UXN7 152 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 DTD1Q8TEA8 209 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 ZNF414Q96IQ9 312 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 RHPN1-AS1Q9BWJ2 59 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 WFDC10AQ9H1F0 79 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 RBKSQ9H477 322 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 SRD5A3Q9H8P0 318 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 TMED3Q9Y3Q3 217 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 PUS1Q9Y606 427 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIMS3-201ENST00000437679 U3KQ87 197 aa11.39□□□□□ -0.59
LIMS3-201ENST00000437679 CHEK1O14757 476 aa11.38□□□□□ -0.59
LIMS3-201ENST00000437679 SLC25A4P12235 298 aa11.38□□□□□ -0.59
LIMS3-201ENST00000437679 SLC25A6P12236 298 aa11.38□□□□□ -0.59
LIMS3-201ENST00000437679 ETFRF1Q6IPR1 90 aa11.38□□□□□ -0.59
LIMS3-201ENST00000437679 SPATA25Q9BR10 227 aa11.38□□□□□ -0.59
LIMS3-201ENST00000437679 MRPL36Q9P0J6 103 aaKnown RBP11.38□□□□□ -0.59
LIMS3-201ENST00000437679 TENM3Q9P273 2699 aa11.38□□□□□ -0.59
LIMS3-201ENST00000437679 IGHV3-49A0A0A0MS15 119 aa11.37□□□□□ -0.59
LIMS3-201ENST00000437679 OR4C46A6NHA9 309 aa11.37□□□□□ -0.59
LIMS3-201ENST00000437679 TMEM170AQ8WVE7 144 aa11.37□□□□□ -0.59
LIMS3-201ENST00000437679 RNF2Q99496 336 aa11.37□□□□□ -0.59
LIMS3-201ENST00000437679 C9orf170A2RU37 121 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 RBMY1BA6NDE4 496 aaKnown RBP11.36□□□□□ -0.59
LIMS3-201ENST00000437679 RBMY1EA6NEQ0 496 aaKnown RBP11.36□□□□□ -0.59
LIMS3-201ENST00000437679 PITX3O75364 302 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 MED6O75586 246 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 HOXB5P09067 269 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 RBMY1DP0C7P1 496 aaKnown RBP11.36□□□□□ -0.59
LIMS3-201ENST00000437679 RND2P52198 227 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 ATP5IP56385 69 aaPredicted RBP11.36□□□□□ -0.59
LIMS3-201ENST00000437679 CNPY1Q3B7I2 92 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 TIGITQ495A1 244 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 PRSS54Q6PEW0 395 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 LINC00322Q6ZN03 302 aaPredicted RBP11.36□□□□□ -0.59
LIMS3-201ENST00000437679 OR1S2Q8NGQ3 325 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 ZFAND3Q9H8U3 227 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 FLVCR2Q9UPI3 526 aa11.36□□□□□ -0.59
LIMS3-201ENST00000437679 IGHV3OR16-13A0A075B7E8 117 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 IGHV3-74A0A0B4J1X5 117 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 FAM90A26D6RGX4 464 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 IFNA4P05014 189 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 CD5P06127 495 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 OR10J1P30954 320 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 GGNBP1Q5YKI7 109 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 COQ8AQ8NI60 647 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 METTL26Q96S19 204 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms