RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TMEM217Q8N7C4 229 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 OR10P1Q8NGE3 313 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 OR1S2Q8NGQ3 325 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 OR1P1Q8NH06 330 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 PINX1Q96BK5 328 aaKnown RBP9.45□□□□□ -0.9
PTPRF-208ENST00000437607 P2RX4Q99571 388 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 ARL6Q9H0F7 186 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 TNCP24821 2201 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 RPS10-NUDT3A0A1W2PQS6 291 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 BCL2L11O43521 198 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 IGF1P05019 195 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 CTRB1P17538 263 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 CXCL2P19875 107 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 OPRK1P41145 380 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 EXOSC2Q13868 293 aaKnown RBP9.44□□□□□ -0.9
PTPRF-208ENST00000437607 CLINT1Q14677 625 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 KHDC1LQ5JSQ8 128 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 ASPHD1Q5U4P2 390 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 CTRB2Q6GPI1 263 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 C18orf65Q6ZTR6 163 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 STPG2Q8N412 459 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 KCNRGQ8N5I3 272 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 TTC9CQ8N5M4 171 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 OR4X2Q8NGF9 303 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 RNASEH2CQ8TDP1 164 aaKnown RBP9.44□□□□□ -0.9
PTPRF-208ENST00000437607 MISP3Q96FF7 219 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 WWC2-AS2Q96NR7 200 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 GON7Q9BXV9 100 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 SMIM3Q9BZL3 60 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 FBXL17Q9UF56 701 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 ZNF580Q9UK33 172 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 CSMD3Q7Z407 3707 aa9.44□□□□□ -0.9
PTPRF-208ENST00000437607 SMCO3A2RU48 225 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 DFFBO76075 338 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 EGR2P11161 476 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-208ENST00000437607 S100A11P31949 105 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 CD69Q07108 199 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 AKIRIN2Q53H80 203 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 SLC25A24Q6NUK1 477 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 C19orf35Q6ZS72 473 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 SLC16A13Q7RTY0 426 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 OR5C1Q8NGR4 320 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 NOL4LQ96MY1 436 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-208ENST00000437607 ATP5SQ99766 215 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 ARPC5LQ9BPX5 153 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 TMEM147Q9BVK8 224 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 ZNF355PQ9NSJ1 428 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 LINC00527Q9UJ94 153 aa9.43□□□□□ -0.9
PTPRF-208ENST00000437607 UBE2L5PA0A1B0GUS4 154 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 LINC01548A6NM66 108 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 G3V318 75 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 H3BUA1 57 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 TAAR5O14804 337 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 CRYGCP07315 174 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 HIST1H1BP16401 226 aaKnown RBP9.42□□□□□ -0.9
PTPRF-208ENST00000437607 SLC35B1P78383 322 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 DLK1P80370 383 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 NHLH2Q02577 135 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 AKR1C1Q04828 323 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 ZNF266Q14584 549 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 ETFRF1Q6IPR1 90 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 TMUB2Q71RG4 321 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 ZNF329Q86UD4 541 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 OR5T1Q8NG75 326 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 TMEM170AQ8WVE7 144 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 SLC35E1Q96K37 410 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 UQCC1Q9NVA1 299 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 THYN1Q9P016 225 aa9.42□□□□□ -0.9
PTPRF-208ENST00000437607 SORL1Q92673 2214 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 BORCS7-ASMTA0A0B4J1R7 106 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 PSMB11A5LHX3 300 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 ATP6V1FQ16864 119 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 LGALSLQ3ZCW2 172 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-208ENST00000437607 C19orf54Q5BKX5 351 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 C8orf86Q6ZUL3 223 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 HAPLN4Q86UW8 402 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 GGACTQ9BVM4 153 aa9.41□□□□□ -0.9
PTPRF-208ENST00000437607 ZNF471Q9BX82 626 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-208ENST00000437607 EPPK1P58107 5090 aaKnown RBP9.4□□□□□ -0.9
PTPRF-208ENST00000437607 IGLV11-55A0A075B6I3 123 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 PMS2P5A8MQ11 134 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 PRSS46E5RG02 174 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 OR2J3O76001 311 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 IFNA5P01569 189 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 PRH1P02810 166 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 MFAP2P55001 183 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 EIF5AP63241 154 aaKnown RBP9.4□□□□□ -0.9
PTPRF-208ENST00000437607 ARL16Q0P5N6 197 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 OPCMLQ14982 345 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 LAMTOR1Q6IAA8 161 aa9.4□□□□□ -0.9
PTPRF-208ENST00000437607 BSCL2Q96G97 398 aaPredicted RBP9.4□□□□□ -0.9
PTPRF-208ENST00000437607 STARD9Q9P2P6 4700 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 FAM223BA6NKX1 122 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 FNDC10F2Z333 226 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 SCGB2A1O75556 95 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 MT-CO2P00403 227 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 TRGV3P03979 118 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 TPPP2P59282 170 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 RHOGP84095 191 aa9.39□□□□□ -0.91
PTPRF-208ENST00000437607 PVRIGQ6DKI7 326 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms