RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ASCL4Q6XD76 172 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 CKAP5Q14008 2032 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 SRP19P09132 144 aaKnown RBP12.81□□□□□ -0.36
PTPRF-206ENST00000429895 ZNF600Q6ZNG1 722 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 A0A1B0GV90 55 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 E9PLN8 166 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 NPC2P61916 151 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 MESP1Q9BRJ9 268 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 MRPS18CQ9Y3D5 142 aaKnown RBP12.81□□□□□ -0.36
PTPRF-206ENST00000429895 IGHV1-46P01743 117 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 OR9G9P0C7N8 305 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 COL11A1P12107 1806 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-206ENST00000429895 DTX2Q86UW9 622 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 OR10W1Q8NGF6 305 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 TRAV41A0A0B4J266 112 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 MLNRO43193 412 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 ZNF497Q6ZNH5 498 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 FAM169BQ8N8A8 192 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 CSRP1P21291 193 aaKnown RBP12.8□□□□□ -0.36
PTPRF-206ENST00000429895 Q6AWC8 147 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 SPAG8Q99932 426 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-206ENST00000429895 COL11A2P13942 1736 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-206ENST00000429895 TRGV11A0A075B6L2 103 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 IGHV3-53P01767 116 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 TMEM144Q7Z5S9 345 aa12.8□□□□□ -0.36
PTPRF-206ENST00000429895 TRBV6-7A0A0A0MS04 114 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 A0A1B0GTI1 187 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 A0A1B0GW15 77 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 SLC25A28Q96A46 364 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 BRD3OSQ6XYD6 125 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 TNS1Q9HBL0 1735 aaKnown RBP12.79□□□□□ -0.36
PTPRF-206ENST00000429895 LINC00158P58513 81 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 COQ2Q96H96 371 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 PSG8Q9UQ74 426 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 CA1P00915 261 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-206ENST00000429895 RNF182Q8N6D2 247 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 EPDR1Q9UM22 224 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 RPL15P61313 204 aaKnown RBP12.79□□□□□ -0.36
PTPRF-206ENST00000429895 ZNF672Q499Z4 452 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-206ENST00000429895 FGFBP3Q8TAT2 258 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 C18orf12Q96KH6 178 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 SLC25A15Q9Y619 301 aa12.79□□□□□ -0.36
PTPRF-206ENST00000429895 SNRNP200O75643 2136 aaKnown RBP12.79□□□□□ -0.36
PTPRF-206ENST00000429895 THSD7AQ9UPZ6 1657 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 PRR31Q5SQ13 230 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 SPCS1Q9Y6A9 102 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 PSCAO43653 123 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 SRSF1Q07955 248 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPRF-206ENST00000429895 LAIR2Q6ISS4 152 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 C1QTNF9P0C862 333 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 CYB5R2Q6BCY4 276 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 IGKV2-40A0A087WW87 121 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-206ENST00000429895 IGKV2D-40P01614 121 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-206ENST00000429895 S100A7L2Q5SY68 101 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 SCN8AQ9UQD0 1980 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 IGLV3-19P01714 112 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 ADMP35318 185 aa12.78□□□□□ -0.36
PTPRF-206ENST00000429895 KIF13BQ9NQT8 1826 aa12.77□□□□□ -0.36
PTPRF-206ENST00000429895 A0A087WV48 116 aa12.77□□□□□ -0.36
PTPRF-206ENST00000429895 TRAV5A0A0B4J249 113 aa12.77□□□□□ -0.36
PTPRF-206ENST00000429895 CHTOPQ9Y3Y2 248 aaKnown RBP12.77□□□□□ -0.36
PTPRF-206ENST00000429895 STAG3L3P0CL85 134 aa12.77□□□□□ -0.37
PTPRF-206ENST00000429895 CYSLTR1Q9Y271 337 aa12.77□□□□□ -0.37
PTPRF-206ENST00000429895 COL24A1Q17RW2 1714 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 HBDP02042 147 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 RCHY1Q96PM5 261 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 PRADC1Q9BSG0 188 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 CST9LQ9H4G1 147 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 TRAV8-2A0A0B4J237 113 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 CD59P13987 128 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 IFITM2Q01629 132 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 STRCP1A6NGW2 1772 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 A0A087WX48 190 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 IGHV2-26A0A0B4J1V2 119 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 PGPEP1LA6NFU8 196 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 SELLP14151 372 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 CKS1BP61024 79 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 DMRT1Q9Y5R6 373 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 RPL23P62829 140 aaKnown RBP12.76□□□□□ -0.37
PTPRF-206ENST00000429895 LINC00114Q6XXX2 140 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 NPIPB5A8MRT5 1133 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 NDPQ00604 133 aa12.76□□□□□ -0.37
PTPRF-206ENST00000429895 GTF3AQ92664 365 aaKnown RBP12.76□□□□□ -0.37
PTPRF-206ENST00000429895 NHP2Q9NX24 153 aaKnown RBP12.76□□□□□ -0.37
PTPRF-206ENST00000429895 C10orf55Q5SWW7 151 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 H3BUT2 72 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 SERF1AO75920 110 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 FAM166AQ6J272 317 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 SSC4DQ8WTU2 575 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 C19orf67A6NJJ6 358 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 GZMBP10144 247 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 MTCL1Q9Y4B5 1905 aaKnown RBP12.75□□□□□ -0.37
PTPRF-206ENST00000429895 ZNF318Q5VUA4 2279 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 IGFBP3P17936 291 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-206ENST00000429895 C15orf32Q32M92 178 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 TRGV1A0A0A0MS02 117 aa12.75□□□□□ -0.37
PTPRF-206ENST00000429895 FOXG1P55316 489 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-206ENST00000429895 DSCR9P59020 149 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 ACTL10Q5JWF8 245 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 EFNA4P52798 201 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms