RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 M0R036 132 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 PDE6DO43924 150 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 CLN5O75503 358 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 YIF1AO95070 293 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 CRYGCP07315 174 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 STAG3L2P0CL84 134 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 STAG3L3P0CL85 134 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 HIST1H1BP16401 226 aaKnown RBP7.54□□□□□ -1.2
HMGB4-201ENST00000425537 GUCA2BQ16661 112 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 LDLRAD2Q5SZI1 272 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 PQLC2Q6ZP29 291 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 TMEM116Q8NCL8 245 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 ARPC1AQ92747 370 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 TVP23CQ96ET8 276 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 C1orf159Q96HA4 380 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 TRGV9Q99603 122 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 TMEM167BQ9NRX6 74 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 FUT9Q9Y231 359 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 UNC79Q9P2D8 2635 aa7.54□□□□□ -1.2
HMGB4-201ENST00000425537 ABCA12Q86UK0 2595 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 IGHV4-30-2A0A087WSY4 118 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 TRAV30A0A087WSZ9 112 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 CENPVL3A0A0U1RRI6 287 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 C9JQL5 133 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 E7EUB6 86 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 COX7A2P2O60397 106 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 SCO1O75880 301 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 HLA-DRB1P01911 266 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 REG1AP05451 166 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 LINC00869P0C866 280 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 AREGP15514 252 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 S100A7P31151 101 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 RND2P52198 227 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 CEBPGP53567 150 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 LINC01356Q8N9X3 169 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 STXBP6Q8NFX7 210 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 NPIPB3Q92617 1050 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 UHRF2Q96PU4 802 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 WNT10AQ9GZT5 417 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 C7orf69Q9H7B7 122 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 DNAJC4Q9NNZ3 241 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 SMCO4Q9NRQ5 59 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 TNFRSF19Q9NS68 423 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 RNF24Q9Y225 148 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 FLNBO75369 2602 aaKnown RBP7.53□□□□□ -1.2
HMGB4-201ENST00000425537 POLQO75417 2590 aa7.53□□□□□ -1.2
HMGB4-201ENST00000425537 AKAP6Q13023 2319 aa7.52□□□□□ -1.2
HMGB4-201ENST00000425537 CENPEQ02224 2701 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 FCN1O00602 326 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 OR5G3P0C626 314 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 CTRB1P17538 263 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 NPBWR1P48145 328 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 CX3CL1P78423 397 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 FAM78BQ5VT40 261 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 C10orf113Q5VZT2 155 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 CTRB2Q6GPI1 263 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 SPNS3Q6ZMD2 512 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 SSX7Q7RTT5 188 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 TTC9CQ8N5M4 171 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 CYB561D1Q8N8Q1 229 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 OR2T6Q8NHC8 308 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 TMEM190Q8WZ59 177 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 SLC25A33Q9BSK2 321 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 MEGF9Q9H1U4 602 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 FNDC4Q9H6D8 234 aaPredicted RBP7.52□□□□□ -1.21
HMGB4-201ENST00000425537 PITPNC1Q9UKF7 332 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 PUS1Q9Y606 427 aaKnown RBP eCLIP7.52□□□□□ -1.21
HMGB4-201ENST00000425537 TNCP24821 2201 aa7.52□□□□□ -1.21
HMGB4-201ENST00000425537 LRBAP50851 2863 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 A0A087WWC5 75 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 ZNF727A8MUV8 499 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 C11orf94C9JXX5 98 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 H3BQ15 152 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 M0QZK8 103 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 PAGE4O60829 102 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 ARL14EPLP0DKL9 152 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 C8orf88P0DMB2 117 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 GCHFRP30047 84 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 LOXL1Q08397 574 aaPredicted RBP7.51□□□□□ -1.21
HMGB4-201ENST00000425537 DEFB113Q30KQ7 82 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 AWAT1Q58HT5 328 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 DYNAPQ8N1N2 210 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 TEX29Q8N6K0 151 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.51□□□□□ -1.21
HMGB4-201ENST00000425537 OR4F5Q8NH21 305 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 OR4X1Q8NH49 305 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 OR4F4Q96R69 305 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 TUBA4BQ9H853 241 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 RPS10P5Q9NQ39 176 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 GAR1Q9NY12 217 aaKnown RBP7.51□□□□□ -1.21
HMGB4-201ENST00000425537 MOB4Q9Y3A3 225 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 APCP25054 2843 aa7.51□□□□□ -1.21
HMGB4-201ENST00000425537 PDZD2O15018 2839 aa7.5□□□□□ -1.21
HMGB4-201ENST00000425537 IGKV1OR2-108A0A075B7D4 117 aa7.5□□□□□ -1.21
HMGB4-201ENST00000425537 TRAV40A0A0B4J280 105 aa7.5□□□□□ -1.21
HMGB4-201ENST00000425537 C7orf77A4D0Y5 90 aa7.5□□□□□ -1.21
HMGB4-201ENST00000425537 DNASE2O00115 360 aaPredicted RBP7.5□□□□□ -1.21
HMGB4-201ENST00000425537 HMGB3O15347 200 aaKnown RBP7.5□□□□□ -1.21
HMGB4-201ENST00000425537 HYPMO75409 117 aa7.5□□□□□ -1.21
HMGB4-201ENST00000425537 CD24P25063 80 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms