RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PERPQ96FX8 193 aa8.96□□□□□ -0.97
LIMS1-207ENST00000422797 RCHY1Q96PM5 261 aa8.96□□□□□ -0.97
LIMS1-207ENST00000422797 GAFA1Q96PS6 74 aa8.96□□□□□ -0.97
LIMS1-207ENST00000422797 KRTAP4-6Q9BYQ5 205 aa8.96□□□□□ -0.97
LIMS1-207ENST00000422797 GFRA4Q9GZZ7 299 aa8.96□□□□□ -0.97
LIMS1-207ENST00000422797 FAM181BA6NEQ2 426 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 A6NNC1 897 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 M0R2Z0 102 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 OR5AL1P0C617 328 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 TSPOP30536 169 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 TNFAIP6P98066 277 aaPredicted RBP8.95□□□□□ -0.98
LIMS1-207ENST00000422797 KIAA1644Q3SXP7 199 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 C1orf229Q6ZS94 237 aaPredicted RBP8.95□□□□□ -0.98
LIMS1-207ENST00000422797 TMPRSS7Q7RTY8 843 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 SPACA3Q8IXA5 215 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 OR5AN1Q8NGI8 311 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 OR9G1Q8NH87 305 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 HARBI1Q96MB7 349 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 ALKBH7Q9BT30 221 aaPredicted RBP8.95□□□□□ -0.98
LIMS1-207ENST00000422797 ST20Q9HBF5 79 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 KLF12Q9Y4X4 402 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 DOCK11Q5JSL3 2073 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 YLPM1P49750 1951 aaKnown RBP8.95□□□□□ -0.98
LIMS1-207ENST00000422797 IGHV1-69-2A0A0G2JMI3 117 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 A0A1B0GXF2 115 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 A8MWL6 223 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 TOMM40O96008 361 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 HBBP68871 147 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 HOXA4Q00056 320 aaPredicted RBP8.95□□□□□ -0.98
LIMS1-207ENST00000422797 PAX2Q02962 417 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 LINC00311Q8N616 119 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 ZNF738Q8NE65 137 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 NUP35Q8NFH5 326 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 NUDT10Q8NFP7 164 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 OR4C13Q8NGP0 309 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 FLYWCH2Q96CP2 140 aaKnown RBP8.95□□□□□ -0.98
LIMS1-207ENST00000422797 NUDT11Q96G61 164 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 FMC1Q96HJ9 113 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 ZNF355PQ9NSJ1 428 aa8.95□□□□□ -0.98
LIMS1-207ENST00000422797 HCFC1P51610 2035 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 H0YJW9 148 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 M0R1B8 84 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 SPRY3O43610 288 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 SPINK4O60575 86 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 FRMD6-AS1P0C7T7 363 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 TNFRSF1AP19438 455 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 NTF3P20783 257 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 MYCNOSP40205 109 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 GNG10P50151 68 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 RPS20P60866 119 aaKnown RBP8.94□□□□□ -0.98
LIMS1-207ENST00000422797 SLAQ13239 276 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 MMDQ15546 238 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 LPAL2Q16609 132 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 SSX8Q7RTT4 187 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 RBMXL3Q8N7X1 1067 aaKnown RBP8.94□□□□□ -0.98
LIMS1-207ENST00000422797 NHLRC2Q8NBF2 726 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 LEAP2Q969E1 77 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 TMEM186Q96B77 213 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 SNRNP40Q96DI7 357 aaKnown RBP8.94□□□□□ -0.98
LIMS1-207ENST00000422797 GPR82Q96P67 336 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 TMEM70Q9BUB7 260 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 CLEC7AQ9BXN2 247 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 RPP21Q9H633 154 aaKnown RBP8.94□□□□□ -0.98
LIMS1-207ENST00000422797 TNFRSF19Q9NS68 423 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 EPDR1Q9UM22 224 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 RNF114Q9Y508 228 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 DNAJC13O75165 2243 aa8.94□□□□□ -0.98
LIMS1-207ENST00000422797 CORTO00230 105 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 CRXO43186 299 aaPredicted RBP8.93□□□□□ -0.98
LIMS1-207ENST00000422797 IGHV3-7P01780 117 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 VMA21Q3ZAQ7 101 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 DHRS13Q6UX07 377 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 ZCCHC24Q8N2G6 241 aaKnown RBP8.93□□□□□ -0.98
LIMS1-207ENST00000422797 C5orf17Q8NAS9 161 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 ZNF596Q8TC21 504 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 FXYD5Q96DB9 178 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 TRGV9Q99603 122 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 C7orf69Q9H7B7 122 aa8.93□□□□□ -0.98
LIMS1-207ENST00000422797 CACNA1GO43497 2377 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 TRBV6-1A0A0K0K1D8 114 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 SRRM4A7MD48 611 aaKnown RBP8.92□□□□□ -0.98
LIMS1-207ENST00000422797 C22orf46C9J442 243 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 IGHV1-46P01743 117 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 IGKV1-16P04430 117 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 SP9P0CG40 484 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 MC5RP33032 325 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 SLC35B1P78383 322 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 TNXAQ16473 311 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 MSMPQ1L6U9 139 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 ATP1A1-AS1Q5TC04 95 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 LEMD1Q68G75 181 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 PVRIGQ6DKI7 326 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 RNASEKQ6P5S7 137 aaKnown RBP8.92□□□□□ -0.98
LIMS1-207ENST00000422797 MUC15Q8N387 334 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 STPG4Q8N801 248 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 NUP37Q8NFH4 326 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 MRPL20Q9BYC9 149 aaKnown RBP8.92□□□□□ -0.98
LIMS1-207ENST00000422797 WASHC3Q9Y3C0 194 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 COX11Q9Y6N1 276 aa8.92□□□□□ -0.98
LIMS1-207ENST00000422797 TET2Q6N021 2002 aaPredicted RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms