RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CD24P25063 80 aa8.71□□□□□ -1.02
USP54-204ENST00000422491 CR1LQ2VPA4 569 aa8.71□□□□□ -1.02
USP54-204ENST00000422491 C2orf91Q6ZV80 131 aa8.71□□□□□ -1.02
USP54-204ENST00000422491 TTTY12Q9BZ98 90 aa8.71□□□□□ -1.02
USP54-204ENST00000422491 OR51B2Q9Y5P1 312 aa8.71□□□□□ -1.02
USP54-204ENST00000422491 F2RL2O00254 374 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 CER1O95813 267 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 SP9P0CG40 484 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 FOXE3Q13461 319 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 MLANAQ16655 118 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 UFSP1Q6NVU6 142 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 PET117Q6UWS5 81 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 ZC2HC1AQ96GY0 325 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 NBEAP1P0C6P0 100 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 PYYP10082 97 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 GPR183P32249 361 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 PRCDQ00LT1 54 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 POU2AF1Q16633 256 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 RNFT1Q5M7Z0 435 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 TCF24Q7RTU0 167 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 SPEM1Q8N4L4 309 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 TMEM251Q8N6I4 163 aa8.7□□□□□ -1.02
USP54-204ENST00000422491 H1FXQ92522 213 aaKnown RBP8.7□□□□□ -1.02
USP54-204ENST00000422491 C7orf71A4D174 169 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 NTN3O00634 580 aaPredicted RBP8.69□□□□□ -1.02
USP54-204ENST00000422491 OR5AL1P0C617 328 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 PRDX2P32119 198 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 RIPPLY3P57055 190 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 C2orf83Q53S99 150 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 MCRIP2Q9BUT9 160 aaKnown RBP8.69□□□□□ -1.02
USP54-204ENST00000422491 ZNF257Q9Y2Q1 563 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 NBEAQ8NFP9 2946 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 LIPFP07098 398 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 FER1L6-AS1Q8NA97 138 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 MAP1LC3CQ9BXW4 147 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 PRNDQ9UKY0 176 aa8.69□□□□□ -1.02
USP54-204ENST00000422491 KLF13Q9Y2Y9 288 aaPredicted RBP8.69□□□□□ -1.02
USP54-204ENST00000422491 SAA2P0DJI9 122 aaPredicted RBP8.68□□□□□ -1.02
USP54-204ENST00000422491 COX8AP10176 69 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 MYCNOSP40205 109 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 LYSMD4Q5XG99 296 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 GTSF1Q8WW33 167 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 LEAP2Q969E1 77 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 TNCP24821 2201 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 TNRC18O15417 2968 aaPredicted RBP8.68□□□□□ -1.02
USP54-204ENST00000422491 IGKV1D-17A0A075B6S4 117 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 GAGE10A6NGK3 116 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 RNASE2P10153 161 aaKnown RBP8.68□□□□□ -1.02
USP54-204ENST00000422491 TMEM11P17152 192 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 CD69Q07108 199 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 CT45A1Q5HYN5 189 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 LINC01545Q5VT33 79 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 LINC00322Q6ZN03 302 aaPredicted RBP8.68□□□□□ -1.02
USP54-204ENST00000422491 CT45A3Q8NHU0 189 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 ZNF714Q96N38 554 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 SPOCK3Q9BQ16 436 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 PAXXQ9BUH6 204 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 PRSS22Q9GZN4 317 aa8.68□□□□□ -1.02
USP54-204ENST00000422491 FAM231BA6NCW3 169 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 G3V4G9 280 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 GNG5P63218 68 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 SEC11AP67812 179 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 OR1B1Q8NGR6 318 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 LRRC29Q8WV35 223 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 FXYD5Q96DB9 178 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 MLST8Q9BVC4 326 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 RPP21Q9H633 154 aaKnown RBP8.67□□□□□ -1.02
USP54-204ENST00000422491 MRPS17Q9Y2R5 130 aaKnown RBP8.67□□□□□ -1.02
USP54-204ENST00000422491 SOX21Q9Y651 276 aaPredicted RBP8.67□□□□□ -1.02
USP54-204ENST00000422491 VPS13AQ96RL7 3174 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 K7ESF4 209 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 UPK2O00526 184 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 CIDEAO60543 219 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 FSTL3O95633 263 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 ATP5IP56385 69 aaPredicted RBP8.67□□□□□ -1.02
USP54-204ENST00000422491 OR1L8Q8NGR8 309 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 NDFIP1Q9BT67 221 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 TEX50A0A1B0GTY4 177 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 SRRM4A7MD48 611 aaKnown RBP8.67□□□□□ -1.02
USP54-204ENST00000422491 PPIAL4DF5H284 164 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 MGST3O14880 152 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 IGHV1-2P23083 117 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 ARF6P62330 175 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 PAX2Q02962 417 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 CT83Q5H943 113 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.67□□□□□ -1.02
USP54-204ENST00000422491 CT55Q8WUE5 264 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 JMJD8Q96S16 334 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 PMCHL2Q9BQD1 86 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 CALYQ9NYX4 217 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 RPH3ALQ9UNE2 315 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 KLF12Q9Y4X4 402 aa8.67□□□□□ -1.02
USP54-204ENST00000422491 CGB3P0DN86 165 aa8.66□□□□□ -1.02
USP54-204ENST00000422491 CGB7P0DN87 165 aa8.66□□□□□ -1.02
USP54-204ENST00000422491 ZNF138P52744 262 aa8.66□□□□□ -1.02
USP54-204ENST00000422491 SSBP2P81877 361 aaPredicted RBP8.66□□□□□ -1.02
USP54-204ENST00000422491 TMEM97Q5BJF2 176 aa8.66□□□□□ -1.02
USP54-204ENST00000422491 CLEC2AQ6UVW9 174 aa8.66□□□□□ -1.02
USP54-204ENST00000422491 PATE2Q6UY27 113 aa8.66□□□□□ -1.02
USP54-204ENST00000422491 HSPB8Q9UJY1 196 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms