RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FAM157CP0CG43 387 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 RND2P52198 227 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 RAB14P61106 215 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 GAMTQ14353 236 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 TREML4Q6UXN2 200 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 OR2G3Q8NGZ4 309 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 NOL4LQ96MY1 436 aaPredicted RBP13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 FNDC4Q9H6D8 234 aaPredicted RBP13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 FBXL7Q9UJT9 491 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 ZNF580Q9UK33 172 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 OR2J3O76001 311 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 HILS1P60008 231 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 Q6ZS46 218 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 TMEM144Q7Z5S9 345 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 OR2T6Q8NHC8 308 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 PSMG3Q9BT73 122 aaPredicted RBP13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 RSG1Q9BU20 258 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 NPCDR1Q9BY65 106 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 SH3BGRL3Q9H299 93 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 ZNF702PQ9H963 129 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 TIMM9Q9Y5J7 89 aa13.44□□□□□ -0.26
CCDC28B-202ENST00000421922 FAM181BA6NEQ2 426 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 H3BUA1 57 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 RGS13O14921 159 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 IGHV3-48P01763 117 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 SPP1P10451 314 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 CAMLGP49069 296 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 RPL15P61313 204 aaKnown RBP13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 SLC35B1P78383 322 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 RHOGP84095 191 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 MLANAQ16655 118 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 TMEM95Q3KNT9 176 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 AKR1C8PQ5T2L2 129 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 TMEM182Q6ZP80 229 aaPredicted RBP13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 NPIPB3Q92617 1050 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 MS4A10Q96PG2 267 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 FANCD2OSQ96PS1 177 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 DMRT1Q9Y5R6 373 aa13.43□□□□□ -0.26
CCDC28B-202ENST00000421922 ZFP92A6NM28 416 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 I3L2K1 104 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 TRGV3P03979 118 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 RNASE1P07998 156 aaKnown RBP13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 PF4V1P10720 104 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 NPBWR1P48145 328 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 NECAP1Q8NC96 275 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 ESM1Q9NQ30 184 aa13.42□□□□□ -0.26
CCDC28B-202ENST00000421922 FAM223BA6NKX1 122 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 K7EIM0 57 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 SOX15O60248 233 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 CRLF1O75462 422 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 MFAP4P55083 255 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 TPPP2P59282 170 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 Q56UQ5 140 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 C19orf54Q5BKX5 351 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 FAM74A1Q5RGS3 127 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 FAM223AQ8IWN6 122 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 LRRC20Q8TCA0 184 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 RNF141Q8WVD5 230 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 CXorf58Q96LI9 332 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 C21orf62Q9NYP8 219 aa13.41□□□□□ -0.26
CCDC28B-202ENST00000421922 UMAD1C9J7I0 102 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 AGPAT2O15120 278 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 TCF21O43680 179 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 NDUFB8O95169 186 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 FABP1P07148 127 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 OR10J1P30954 320 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 ELLP55199 621 aaPredicted RBP13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 SERF2P84101 59 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 ATP5G2Q06055 141 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 C15orf32Q32M92 178 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 FFAR4Q5NUL3 377 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 TMEM116Q8NCL8 245 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 OR4X1Q8NH49 305 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 VN1R17PQ8TDU5 208 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 EEF1AKMT3Q96AZ1 226 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 MGST2Q99735 147 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 GGTLC1Q9BX51 225 aa13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 LSM4Q9Y4Z0 139 aaKnown RBP13.4□□□□□ -0.26
CCDC28B-202ENST00000421922 PSMB11A5LHX3 300 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 GNG7O60262 68 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 MBP02144 154 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 MDKP21741 143 aaPredicted RBP13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 RAB5CP51148 216 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 Q8N2B8 174 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 THAP8Q8NA92 274 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 GAR1Q9NY12 217 aaKnown RBP13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 PXMP4Q9Y6I8 212 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 TRAV30A0A087WSZ9 112 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 TRBV9A0A0B4J1U6 114 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 MFSD2BA6NFX1 497 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 ZNF705EA8MWA4 302 aaPredicted RBP13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 TSPAN15O95858 294 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 SULT1A2P50226 295 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 DEFA5Q01523 94 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 CYP2G1PQ6ZSU1 146 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 CENPVQ7Z7K6 275 aaPredicted RBP13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 S4R3C0 116 aa13.39□□□□□ -0.27
CCDC28B-202ENST00000421922 NSD1Q96L73 2696 aaPredicted RBP13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 TCRBV4S1A1TA0A5B7 111 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 TMEM89A2RUT3 159 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms