RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 C15orf54Q8N8G6 183 aa16.63■□□□□ 0.25
GPC1-202ENST00000420138 Q8N9W7 124 aa16.63■□□□□ 0.25
GPC1-202ENST00000420138 OR2T6Q8NHC8 308 aa16.63■□□□□ 0.25
GPC1-202ENST00000420138 SSMEM1Q8WWF3 244 aa16.63■□□□□ 0.25
GPC1-202ENST00000420138 SRSF8Q9BRL6 282 aaKnown RBP16.63■□□□□ 0.25
GPC1-202ENST00000420138 TUBA4BQ9H853 241 aa16.63■□□□□ 0.25
GPC1-202ENST00000420138 UNC79Q9P2D8 2635 aa16.63■□□□□ 0.25
GPC1-202ENST00000420138 PDZD2O15018 2839 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 NCBP2LA6PVI3 153 aaKnown RBP16.62■□□□□ 0.25
GPC1-202ENST00000420138 COLCA2A8K830 154 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 H3BQ15 152 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 GATA3P23771 443 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 CX3CL1P78423 397 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 NDPQ00604 133 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 FXYD3Q14802 87 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 ZNF562Q6V9R5 426 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 RBMS3Q6XE24 437 aaKnown RBP16.62■□□□□ 0.25
GPC1-202ENST00000420138 OR1P1Q8NH06 330 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 VAX2Q9UIW0 290 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 F11RQ9Y624 299 aaKnown RBP16.62■□□□□ 0.25
GPC1-202ENST00000420138 SOX21Q9Y651 276 aaPredicted RBP16.62■□□□□ 0.25
GPC1-202ENST00000420138 CSMD1Q96PZ7 3565 aa16.62■□□□□ 0.25
GPC1-202ENST00000420138 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.62■□□□□ 0.25
GPC1-202ENST00000420138 A0A0U1RQK1 487 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 CYB5BO43169 146 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 CNIH1O95406 144 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 DEFA4P12838 97 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 PIFOQ8TCI5 191 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 MEGF9Q9H1U4 602 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 SLC25A22Q9H936 323 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 MRPL36Q9P0J6 103 aaKnown RBP16.61■□□□□ 0.25
GPC1-202ENST00000420138 PXMP4Q9Y6I8 212 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 NAV3Q8IVL0 2385 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 CRYGCP07315 174 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 PRR20EP86478 221 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 PRR20CP86479 221 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 PRR20DP86480 221 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 PRR20BP86481 221 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 PRR20AP86496 221 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 FAM122CQ6P4D5 195 aa16.61■□□□□ 0.25
GPC1-202ENST00000420138 FAM103A1Q9BTL3 118 aaKnown RBP16.61■□□□□ 0.25
GPC1-202ENST00000420138 HECTD1Q9ULT8 2610 aa16.6■□□□□ 0.25
GPC1-202ENST00000420138 RPL29P47914 159 aaKnown RBP16.6■□□□□ 0.25
GPC1-202ENST00000420138 ASPHD1Q5U4P2 390 aa16.6■□□□□ 0.25
GPC1-202ENST00000420138 NIPSNAP3BQ9BS92 247 aa16.6■□□□□ 0.25
GPC1-202ENST00000420138 SLC45A2Q9UMX9 530 aa16.6■□□□□ 0.25
GPC1-202ENST00000420138 PRRC2AP48634 2157 aaKnown RBP16.59■□□□□ 0.25
GPC1-202ENST00000420138 LINC00869P0C866 280 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 CTRB1P17538 263 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 FLI1Q01543 452 aaPredicted RBP16.59■□□□□ 0.25
GPC1-202ENST00000420138 CTRB2Q6GPI1 263 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 WFDC11Q8NEX6 87 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 TVP23CQ96ET8 276 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 FOXC2Q99958 501 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 ITPR2Q14571 2701 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 IGHV3-48P01763 117 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 TAGLN2P37802 199 aaKnown RBP16.59■□□□□ 0.25
GPC1-202ENST00000420138 TMEM249Q2WGJ8 235 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 STPG3Q8N7X2 389 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 RAB24Q969Q5 203 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 MLXQ9UH92 298 aa16.59■□□□□ 0.25
GPC1-202ENST00000420138 IGHV7-81A0A0B4J1V7 117 aa16.58■□□□□ 0.24
GPC1-202ENST00000420138 SEC14L6B5MCN3 397 aa16.58■□□□□ 0.24
GPC1-202ENST00000420138 HMGB3O15347 200 aaKnown RBP16.58■□□□□ 0.24
GPC1-202ENST00000420138 IGHV4-31P0DP07 118 aa16.58■□□□□ 0.24
GPC1-202ENST00000420138 SLC35E3Q7Z769 313 aa16.58■□□□□ 0.24
GPC1-202ENST00000420138 SLC35E1Q96K37 410 aa16.58■□□□□ 0.24
GPC1-202ENST00000420138 C1RLQ9NZP8 487 aa16.58■□□□□ 0.24
GPC1-202ENST00000420138 TGFAP01135 160 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 EGR2P11161 476 aaPredicted RBP16.57■□□□□ 0.24
GPC1-202ENST00000420138 OR10J1P30954 320 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 CDC34P49427 236 aaPredicted RBP16.57■□□□□ 0.24
GPC1-202ENST00000420138 B2MP61769 119 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 RAB31Q13636 194 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 FAM90A2PQ658T7 463 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 ABHD5Q8WTS1 349 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 ARPC1AQ92747 370 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 MISP3Q96FF7 219 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 ACY3Q96HD9 319 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 WNT10AQ9GZT5 417 aa16.57■□□□□ 0.24
GPC1-202ENST00000420138 IGKV1D-37A0A075B6S9 117 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 HLA-DRB1P01911 266 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 CRYBA1P05813 215 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 NPIPB3Q92617 1050 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 SLC25A33Q9BSK2 321 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 TMPRSS5Q9H3S3 457 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 MANBALQ9NQG1 85 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 KCNIP2Q9NS61 270 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 CELSR1Q9NYQ6 3014 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 PSMB3P49720 205 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 THAP8Q8NA92 274 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 HSPB9Q9BQS6 159 aa16.56■□□□□ 0.24
GPC1-202ENST00000420138 NDUFS6O75380 124 aaKnown RBP16.55■□□□□ 0.24
GPC1-202ENST00000420138 MT-ND4LP03901 98 aa16.55■□□□□ 0.24
GPC1-202ENST00000420138 FOLR2P14207 255 aa16.55■□□□□ 0.24
GPC1-202ENST00000420138 GATA2P23769 480 aaPredicted RBP16.55■□□□□ 0.24
GPC1-202ENST00000420138 MEF2BQ02080 365 aaPredicted RBP16.55■□□□□ 0.24
GPC1-202ENST00000420138 HIST1H2BAQ96A08 127 aa16.55■□□□□ 0.24
GPC1-202ENST00000420138 A0A087WWC5 75 aa16.54■□□□□ 0.24
GPC1-202ENST00000420138 I3L2K1 104 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms