RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 SGMS2Q8NHU3 365 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 PCNPQ8WW12 178 aaKnown RBP4.72□□□□□ -1.65
HMGB3-202ENST00000419110 CXorf58Q96LI9 332 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 TMEM68Q96MH6 324 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 MGST2Q99735 147 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 HSPB9Q9BQS6 159 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 FAM103A1Q9BTL3 118 aaKnown RBP4.72□□□□□ -1.65
HMGB3-202ENST00000419110 NPFFR1Q9GZQ6 430 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 SLC25A22Q9H936 323 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 NPVFQ9HCQ7 196 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 MED9Q9NWA0 146 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 THYN1Q9P016 225 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 PXMP4Q9Y6I8 212 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 CSMD2Q7Z408 3487 aa4.72□□□□□ -1.65
HMGB3-202ENST00000419110 SONP18583 2426 aaKnown RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 TRAV41A0A0B4J266 112 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 CTXND1A0A1B0GTU2 59 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 MAP1LC3B2A6NCE7 125 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 ZFP92A6NM28 416 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 E7EUB6 86 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 F8W735 103 aaPredicted RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 AP4M1O00189 453 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 FCN1O00602 326 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 AGPAT2O15120 278 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 MT-CO2P00403 227 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 IFNA1P01562 189 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 M6PRP20645 277 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 CDC34P49427 236 aaPredicted RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 CRIP2P52943 208 aaPredicted RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 B2MP61769 119 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 SELENOTP62341 195 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 ACSM6Q6P461 480 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 CIARTQ8N365 385 aaPredicted RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 TMEM86BQ8N661 226 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 COMMD1Q8N668 190 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 STPG3Q8N7X2 389 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 RCC1LQ96I51 464 aaKnown RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 PFDN5Q99471 154 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 KRTAP4-12Q9BQ66 201 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 MAP1LC3BQ9GZQ8 125 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 YAE1D1Q9NRH1 226 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 ZNF580Q9UK33 172 aa4.71□□□□□ -1.66
HMGB3-202ENST00000419110 LSM4Q9Y4Z0 139 aaKnown RBP4.71□□□□□ -1.66
HMGB3-202ENST00000419110 MAP1AP78559 2803 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 IGLV11-55A0A075B6I3 123 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 TCRBV4S1A1TA0A5B7 111 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 SH2D7A6NKC9 451 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 FAM223BA6NKX1 122 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 H3BUA1 57 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 COX7A2P2O60397 106 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 CRYGCP07315 174 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 LINC00869P0C866 280 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 OR10J1P30954 320 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 IER3P46695 156 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 NPBWR1P48145 328 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 MFAP2P55001 183 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 RHOBP62745 196 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 KRTAP1-1Q07627 177 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 GAMTQ14353 236 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 LCE3BQ5TA77 95 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 MIC13Q5XKP0 118 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 PVRIGQ6DKI7 326 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 FAM122CQ6P4D5 195 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 C19orf35Q6ZS72 473 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 CYP2G1PQ6ZSU1 146 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 IL17RELQ6ZVW7 336 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 CENPVQ7Z7K6 275 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 FAM223AQ8IWN6 122 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 IQCF2Q8IXL9 164 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 BCL6BQ8N143 479 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 TTC9CQ8N5M4 171 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 SIGLECL1Q8N7X8 197 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 THAP8Q8NA92 274 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 BPIFCQ8NFQ6 507 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 OR1L4Q8NGR5 311 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 ZNF48Q96MX3 618 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 RNF2Q99496 336 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 PBDC1Q9BVG4 233 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 MRPL32Q9BYC8 188 aaKnown RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 ACTR3CQ9C0K3 210 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 WNT10AQ9GZT5 417 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 HRH4Q9H3N8 390 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 FNDC4Q9H6D8 234 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-202ENST00000419110 ZNF355PQ9NSJ1 428 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 SLC39A9Q9NUM3 307 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 TMEM160Q9NX00 188 aa4.7□□□□□ -1.66
HMGB3-202ENST00000419110 A0A1B0GV50 99 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 A0A1W2PPV4 95 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 RAB19A4D1S5 217 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 SEC14L6B5MCN3 397 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 I3L2K1 104 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 I3L521 148 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 HOXA3O43365 443 aaPredicted RBP4.69□□□□□ -1.66
HMGB3-202ENST00000419110 GNG7O60262 68 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 OR2J3O76001 311 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 IGHG2P01859 326 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 IGF1P05019 195 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 FAM157CP0CG43 387 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 SRD5A1P18405 259 aa4.69□□□□□ -1.66
HMGB3-202ENST00000419110 MDKP21741 143 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms