RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 C9orf139Q6ZV77 190 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 TTC9CQ8N5M4 171 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 SFT2D1Q8WV19 159 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 NPIPB3Q92617 1050 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 KCNIP2Q9NS61 270 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 CREBBPQ92793 2442 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 IGKV1D-37A0A075B6S9 117 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 LINC01548A6NM66 108 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 RPL29P47914 159 aaKnown RBP11.08□□□□□ -0.64
GPNMB-203ENST00000409458 PRR20EP86478 221 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 PRR20CP86479 221 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 PRR20DP86480 221 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 PRR20BP86481 221 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 PRR20AP86496 221 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 ECSCRQ19T08 205 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 LCN15Q6UWW0 184 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 THAP8Q8NA92 274 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 SGMS2Q8NHU3 365 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 TMEM231Q9H6L2 316 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 SLC45A2Q9UMX9 530 aa11.08□□□□□ -0.64
GPNMB-203ENST00000409458 ITPR2Q14571 2701 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 IGLV11-55A0A075B6I3 123 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 K7EIM0 57 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 SOX15O60248 233 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 IGHV4-59P01825 116 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 LINC00869P0C866 280 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 FGF8P55075 233 aaPredicted RBP11.07□□□□□ -0.64
GPNMB-203ENST00000409458 UQCC3Q6UW78 93 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 BPIFCQ8NFQ6 507 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 OR5T1Q8NG75 326 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 OR1L6Q8NGR2 347 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 MBD3L1Q8WWY6 194 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 LINC00052Q96N35 136 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 FANCD2OSQ96PS1 177 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 SLC39A9Q9NUM3 307 aa11.07□□□□□ -0.64
GPNMB-203ENST00000409458 TRAV1-1A0A0B4J248 108 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 CTXND1A0A1B0GTU2 59 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 MAP1LC3B2A6NCE7 125 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 HMGB3O15347 200 aaKnown RBP11.06□□□□□ -0.64
GPNMB-203ENST00000409458 GATA2P23769 480 aaPredicted RBP11.06□□□□□ -0.64
GPNMB-203ENST00000409458 KRTAP1-1Q07627 177 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 CYP2G1PQ6ZSU1 146 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 COMMD1Q8N668 190 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 ZNF48Q96MX3 618 aaPredicted RBP11.06□□□□□ -0.64
GPNMB-203ENST00000409458 MAP1LC3BQ9GZQ8 125 aa11.06□□□□□ -0.64
GPNMB-203ENST00000409458 CSPG4Q6UVK1 2322 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 SEC14L6B5MCN3 397 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 HBE1P02100 147 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 CDC34P49427 236 aaPredicted RBP11.05□□□□□ -0.64
GPNMB-203ENST00000409458 DEFA5Q01523 94 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 UNQ5815/PRO19632Q6UWF5 114 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 TMEM116Q8NCL8 245 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 FAM110DQ8TAY7 271 aaPredicted RBP11.05□□□□□ -0.64
GPNMB-203ENST00000409458 FAM210AQ96ND0 272 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 SCRT1Q9BWW7 348 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 ACTR3CQ9C0K3 210 aaPredicted RBP11.05□□□□□ -0.64
GPNMB-203ENST00000409458 PITPNC1Q9UKF7 332 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 FASNP49327 2511 aaKnown RBP11.05□□□□□ -0.64
GPNMB-203ENST00000409458 HECTD1Q9ULT8 2610 aa11.05□□□□□ -0.64
GPNMB-203ENST00000409458 TCRBV4S1A1TA0A5B7 111 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 BTBD17A6NE02 478 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 ZFP92A6NM28 416 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 G3V318 75 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 ZP3P21754 424 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 IER3P46695 156 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 ZNF90Q03938 601 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 GUK1Q16774 197 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 IL17RELQ6ZVW7 336 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 RAB24Q969Q5 203 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 TMUB1Q9BVT8 246 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 CCDC168Q8NDH2 2452 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 M0QZK8 103 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 CYB5BO43169 146 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 C9orf152Q5JTZ5 239 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 C16orf82Q7Z2V1 217 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 NARS2Q96I59 477 aaKnown RBP11.04□□□□□ -0.64
GPNMB-203ENST00000409458 GSX1Q9H4S2 264 aaPredicted RBP11.04□□□□□ -0.64
GPNMB-203ENST00000409458 TREM1Q9NP99 234 aa11.04□□□□□ -0.64
GPNMB-203ENST00000409458 ANK3Q12955 4377 aaKnown RBP11.03□□□□□ -0.64
GPNMB-203ENST00000409458 C9JQL5 133 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 TSPAN9O75954 239 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 OR2J3O76001 311 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 CD5P06127 495 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 Q6YL49 198 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 OR4X1Q8NH49 305 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 TRGV9Q99603 122 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 TNFRSF19Q9NS68 423 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 S4R3C0 116 aa11.03□□□□□ -0.64
GPNMB-203ENST00000409458 TEX15Q9BXT5 2789 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 CD5LO43866 347 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 NDUFB8O95169 186 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 CRIP2P52943 208 aaPredicted RBP11.02□□□□□ -0.64
GPNMB-203ENST00000409458 BLCAPP62952 87 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 AKIRIN2Q53H80 203 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 C19orf54Q5BKX5 351 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 SPATA31B1PQ5VZV4 182 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 SPNS3Q6ZMD2 512 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 Q6ZS46 218 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 TMEM68Q96MH6 324 aa11.02□□□□□ -0.64
GPNMB-203ENST00000409458 RARRES2Q99969 163 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms