RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PSG7Q13046 419 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 TAL2Q16559 108 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 C14orf144Q96I85 54 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 LINC01587Q99440 93 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 WFDC6Q9BQY6 131 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 SPAARA0A1B0GVQ0 90 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 COLCA2A8K830 154 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 C4orf51C9J302 202 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 E9PLN8 166 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 RHODO00212 210 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 DLEU1O43261 78 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 ZNF124Q15973 351 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 NMSQ5H8A3 153 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 BCL6BQ8N143 479 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-203ENST00000409050 FAM168AQ92567 244 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 VKORC1Q9BQB6 163 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 C20orf144Q9BQM9 153 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 TUBGCP6Q96RT7 1819 aa5.08□□□□□ -1.6
SCN1A-203ENST00000409050 SAA2-SAA4A0A096LPE2 208 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 SRRM5B3KS81 715 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 SAA2P0DJI9 122 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-203ENST00000409050 LINC01545Q5VT33 79 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 C20orf204Q6ZNR8 217 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 KLK15Q9H2R5 256 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 BEX4Q9NWD9 120 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-203ENST00000409050 NHP2Q9NX24 153 aaKnown RBP5.07□□□□□ -1.6
SCN1A-203ENST00000409050 ARFGEF1Q9Y6D6 1849 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 NDUFB8O95169 186 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 REG1AP05451 166 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 ZNF415Q09FC8 603 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 FOXL2NBQ6ZUU3 175 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 TMEM141Q96I45 108 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 SEPSECSQ9HD40 501 aaKnown RBP5.07□□□□□ -1.6
SCN1A-203ENST00000409050 SHISA3A0PJX4 238 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 WNT2P09544 360 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 TMEM249Q2WGJ8 235 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 UTF1Q5T230 341 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 MIA3Q5JRA6 1907 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 H3BMM0 161 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 H3BQ85 93 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 K7EMI3 77 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 TOMM40O96008 361 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 CD28P10747 220 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 RPL36AP83881 106 aaKnown RBP5.07□□□□□ -1.6
SCN1A-203ENST00000409050 STHQ8IWL8 128 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 RPL36ALQ969Q0 106 aaKnown RBP5.07□□□□□ -1.6
SCN1A-203ENST00000409050 ATAD5Q96QE3 1844 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 LHX2P50458 406 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 CDCP2Q5VXM1 449 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 SFTA2Q6UW10 78 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 ASCL4Q6XD76 172 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 OCC1Q8TAD7 63 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 GGTLC1Q9BX51 225 aa5.07□□□□□ -1.6
SCN1A-203ENST00000409050 TRGV2A0A075B6R0 118 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 IGHV1-2P23083 117 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 VDAC2P45880 294 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-203ENST00000409050 ZNF138P52744 262 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 TRPM6Q9BX84 2022 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 COL5A3P25940 1745 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-203ENST00000409050 ZFC3H1O60293 1989 aaKnown RBP5.06□□□□□ -1.6
SCN1A-203ENST00000409050 ADARB2-AS1A8MUL3 147 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 ZNHIT1O43257 154 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 APELAP0DMC3 54 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 CRYBA2P53672 197 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 PAX8Q06710 450 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 UBE2V1Q13404 147 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 LDLRAD2Q5SZI1 272 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 C1QL2Q7Z5L3 287 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 C18orf15Q96N68 181 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 LRRC37AA6NMS7 1700 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 OTX1P32242 354 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-203ENST00000409050 SUPT4H1P63272 117 aaKnown RBP5.06□□□□□ -1.6
SCN1A-203ENST00000409050 TREML4Q6UXN2 200 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 LINC01551Q86U37 167 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 ZNRF1Q8ND25 227 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 MBNL3Q9NUK0 354 aaKnown RBP5.06□□□□□ -1.6
SCN1A-203ENST00000409050 TCRAP04437 139 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 GATA3P23771 443 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 SIGLEC15Q6ZMC9 328 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 TEX43Q6ZNM6 134 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 ATOH7Q8N100 152 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 SSC4DQ8WTU2 575 aa5.06□□□□□ -1.6
SCN1A-203ENST00000409050 NDUFA3O95167 84 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 CD7P09564 240 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 ESDP10768 282 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 RNASE4P34096 147 aaKnown RBP5.05□□□□□ -1.6
SCN1A-203ENST00000409050 FAM90A2PQ658T7 463 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 PLSCR4Q9NRQ2 329 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 CYTL1Q9NRR1 136 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 KLF12Q9Y4X4 402 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 SHANK3Q9BYB0 1731 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 PLXNB2O15031 1838 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 PRR19A6NJB7 356 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 CGB1A6NKQ9 187 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 RNASE1P07998 156 aaKnown RBP5.05□□□□□ -1.6
SCN1A-203ENST00000409050 H0YIZ8 118 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 GFRA3O60609 400 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 THBDP07204 575 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 FAM231DQ6ZW35 169 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 OR11H6Q8NGC7 330 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 179.4 ms