RNA–Protein interactions for RNA: ENST00000405547.7

SNED1-205, Transcript of sushi, nidogen and EGF like domains 1, human

APPRIS ALT2 TSL 5 BASIC

Gene SNED1, Length 7,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNED1-205	ENST00000405547	TIMP3	P35625	211 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	LHX2	P50458	406 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	RRN3P1	Q2M238	152 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	OCC1	Q8TAD7	63 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	ZNF124	Q15973	351 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	MRPL14	Q6P1L8	145 aa	Known RBP	11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	TEX38	Q6PEX7	206 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	FDCSP	Q8NFU4	85 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	IGKV1D-8	A0A087WSZ0	117 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	LINC00614	P0C842	121 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	PNKD	Q8N490	385 aa		11.18	□□□□□ -0.62
SNED1-205	ENST00000405547	CHCHD1	Q96BP2	118 aa	Known RBP	11.18	□□□□□ -0.62
SNED1-205	ENST00000405547		A0A0G2JMM0	328 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547		A0A1W2PPB8	328 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547		A0A1W2PRS3	328 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	KIR3DP1	A8MWS1	328 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	CXCL1	P09341	107 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	APOBEC3A	P31941	199 aa	Predicted RBP	11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	GPR183	P32249	361 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	ATP5L2	Q7Z4Y8	100 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	OTOR	Q9NRC9	128 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	DPM3	Q9P2X0	92 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	DNAL4	O96015	105 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	AMBP	P02760	352 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	ZNF56	Q15929	161 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	FER1L6-AS1	Q8NA97	138 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	LOC102723996	A0A087X1L8	192 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	ZNF883	P0CG24	379 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	LYL1	P12980	280 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	PLPPR1	Q8TBJ4	325 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	C5orf30	Q96GV9	206 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	TNFSF13	O75888	250 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	CELA3A	P09093	270 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	STAG3L3	P0CL85	134 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	IGHV1-2	P23083	117 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	TMEM170B	Q5T4T1	132 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	ST20	Q9HBF5	79 aa		11.17	□□□□□ -0.62
SNED1-205	ENST00000405547	UPK2	O00526	184 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	ST6GALNAC6	Q969X2	333 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	SPCS1	Q9Y6A9	102 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	CRIPAK	Q8N1N5	446 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	FOXA2	Q9Y261	457 aa	Predicted RBP	11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	TNC	P24821	2201 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	GDF15	Q99988	308 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	SAA2-SAA4	A0A096LPE2	208 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547		H7C1H1	209 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	SAA2	P0DJI9	122 aa	Predicted RBP	11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	DUT	P33316	252 aa	Known RBP	11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	TFPI2	P48307	235 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	RASL11A	Q6T310	242 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	RTN4RL2	Q86UN3	420 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	BEND2	Q8NDZ0	799 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	VWCE	Q96DN2	955 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	SCGB3A1	Q96QR1	104 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	AGMAT	Q9BSE5	352 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	TCRBV4S1A1T	A0A5B7	111 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	ARL6IP6	Q8N6S5	226 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	EPDR1	Q9UM22	224 aa		11.16	□□□□□ -0.62
SNED1-205	ENST00000405547	MST1	P26927	711 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	OR4X2	Q8NGF9	303 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	SPOCK3	Q9BQ16	436 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	C21orf62	Q9NYP8	219 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	WDR83OS	Q9Y284	106 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	TANC1	Q9C0D5	1861 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	GFI1B	Q5VTD9	330 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	SAMD13	Q5VXD3	122 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547		A0A1B0GWB2	263 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	FBXL15	Q9H469	300 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	PPBP	P02775	128 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	FBLN7	Q53RD9	439 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	FAM74A4	Q5TZK3	123 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	ST6GALNAC3	Q8NDV1	305 aa		11.15	□□□□□ -0.62
SNED1-205	ENST00000405547	SAA1	P0DJI8	122 aa	Predicted RBP	11.15	□□□□□ -0.63
SNED1-205	ENST00000405547	CRYGS	P22914	178 aa		11.15	□□□□□ -0.63
SNED1-205	ENST00000405547	NMS	Q5H8A3	153 aa		11.15	□□□□□ -0.63
SNED1-205	ENST00000405547	FOXC2	Q99958	501 aa		11.15	□□□□□ -0.63
SNED1-205	ENST00000405547	C2orf88	Q9BSF0	95 aa		11.15	□□□□□ -0.63
SNED1-205	ENST00000405547	MOB4	Q9Y3A3	225 aa		11.15	□□□□□ -0.63
SNED1-205	ENST00000405547	UMOD	P07911	640 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	CELA3B	P08861	270 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	RNFT1	Q5M7Z0	435 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	TNRC6A	Q8NDV7	1962 aa	Known RBP	11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	NAPSA	O96009	420 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	MRPL20	Q9BYC9	149 aa	Known RBP	11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	MED12L	Q86YW9	2145 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	ASCL2	Q99929	193 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	FOXH1	O75593	365 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	GATA2	P23769	480 aa	Predicted RBP	11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	SNAI2	O43623	268 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	PRCD	Q00LT1	54 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	ZNF418	Q8TF45	676 aa	Predicted RBP	11.14	□□□□□ -0.63
SNED1-205	ENST00000405547		M0R381	172 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	C1orf194	Q5T5A4	169 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	DCTN5	Q9BTE1	182 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	NXT2	Q9NPJ8	142 aa	Known RBP	11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	PGPEP1L	A6NFU8	196 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547		C9JCJ5	164 aa		11.14	□□□□□ -0.63
SNED1-205	ENST00000405547	SEC11A	P67812	179 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms