RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 DLK1P80370 383 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 KLK9Q2XQG4 91 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 ACSM6Q6P461 480 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 SCARB1Q8WTV0 552 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 CACNG8Q8WXS5 425 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 USMG5Q96IX5 58 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 KLK9Q9UKQ9 250 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 A0A0D9SG52 128 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 MFSD2BA6NFX1 497 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 PRSS46E5RG02 174 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 CXCL2P19875 107 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 PROK1P58294 105 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 ZNF345Q14585 488 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 ATP6V1FQ16864 119 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 KRTAP24-1Q3LI83 254 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 KHDC1LQ5JSQ8 128 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 C11orf44Q8N8P7 122 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 VN1R17PQ8TDU5 208 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 ACY3Q96HD9 319 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 CXorf58Q96LI9 332 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 C21orf62Q9NYP8 219 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 FBXL17Q9UF56 701 aa14.06□□□□□ -0.16
SDC1-203ENST00000403076 IGHV3-11P01762 117 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 IGHV3-23P01764 117 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 AKR1C1Q04828 323 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 KCNRGQ8N5I3 272 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 UBAC2Q8NBM4 344 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 EEF1AKMT3Q96AZ1 226 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 GGACTQ9BVM4 153 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 ARL6Q9H0F7 186 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 RND2P52198 227 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 MFAP4P55083 255 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 GAMTQ14353 236 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 LGALSLQ3ZCW2 172 aaPredicted RBP14.05□□□□□ -0.16
SDC1-203ENST00000403076 Q56UQ5 140 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 TMUB2Q71RG4 321 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 RNF152Q8N8N0 203 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 TMEM147Q9BVK8 224 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 UQCC1Q9NVA1 299 aa14.05□□□□□ -0.16
SDC1-203ENST00000403076 TCRBV4S1A1TA0A5B7 111 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 DFFBO76075 338 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 CD28P10747 220 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 NPBWR1P48145 328 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 ZNF491Q8N8L2 437 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 WIPF2Q8TF74 440 aaPredicted RBP14.04□□□□□ -0.16
SDC1-203ENST00000403076 NPIPB3Q92617 1050 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 ATP5SQ99766 215 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 NPVFQ9HCQ7 196 aa14.04□□□□□ -0.16
SDC1-203ENST00000403076 TRBV7-1A0A0A6YYK4 115 aa14.03□□□□□ -0.16
SDC1-203ENST00000403076 KANTRA0A1W2PQU2 76 aa14.03□□□□□ -0.16
SDC1-203ENST00000403076 IFNA5P01569 189 aa14.03□□□□□ -0.16
SDC1-203ENST00000403076 OR5B12Q96R08 314 aa14.03□□□□□ -0.16
SDC1-203ENST00000403076 C19orf24Q9BVV8 132 aa14.03□□□□□ -0.16
SDC1-203ENST00000403076 MRPL36Q9P0J6 103 aaKnown RBP14.03□□□□□ -0.16
SDC1-203ENST00000403076 UBE2L5PA0A1B0GUS4 154 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 FNDC10F2Z333 226 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 TAAR5O14804 337 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 GNG7O60262 68 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 AWAT1Q58HT5 328 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 TCTEX1D4Q5JR98 221 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 CLEC19AQ6UXS0 136 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 C9orf62Q8N4C0 152 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 OR4X1Q8NH49 305 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 ZNF502Q8TBZ5 544 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 TMEM158Q8WZ71 300 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 UBE2E2Q96LR5 201 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 ARPC5LQ9BPX5 153 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 WFDC1Q9HC57 220 aa14.02□□□□□ -0.16
SDC1-203ENST00000403076 KIAA0141Q14154 515 aaPredicted RBP14.01□□□□□ -0.17
SDC1-203ENST00000403076 TMEM116Q8NCL8 245 aa14.01□□□□□ -0.17
SDC1-203ENST00000403076 SCGB1C1Q8TD33 95 aa14.01□□□□□ -0.17
SDC1-203ENST00000403076 MYOZ3Q8TDC0 251 aa14.01□□□□□ -0.17
SDC1-203ENST00000403076 TXN2Q99757 166 aa14.01□□□□□ -0.17
SDC1-203ENST00000403076 GAR1Q9NY12 217 aaKnown RBP14.01□□□□□ -0.17
SDC1-203ENST00000403076 BORCS7-ASMTA0A0B4J1R7 106 aa14□□□□□ -0.17
SDC1-203ENST00000403076 ANKRD34BA5PLL1 514 aa14□□□□□ -0.17
SDC1-203ENST00000403076 OR2T8A6NH00 312 aa14□□□□□ -0.17
SDC1-203ENST00000403076 ZFP92A6NM28 416 aa14□□□□□ -0.17
SDC1-203ENST00000403076 NUDT19A8MXV4 375 aa14□□□□□ -0.17
SDC1-203ENST00000403076 BCL2L11O43521 198 aa14□□□□□ -0.17
SDC1-203ENST00000403076 CLN5O75503 358 aa14□□□□□ -0.17
SDC1-203ENST00000403076 SCGB2A1O75556 95 aa14□□□□□ -0.17
SDC1-203ENST00000403076 CLEC3BP05452 202 aa14□□□□□ -0.17
SDC1-203ENST00000403076 C4BPBP20851 252 aa14□□□□□ -0.17
SDC1-203ENST00000403076 GPR183P32249 361 aa14□□□□□ -0.17
SDC1-203ENST00000403076 ZNF266Q14584 549 aa14□□□□□ -0.17
SDC1-203ENST00000403076 HIST2H2BDQ6DRA6 164 aa14□□□□□ -0.17
SDC1-203ENST00000403076 LAMTOR1Q6IAA8 161 aa14□□□□□ -0.17
SDC1-203ENST00000403076 TREML4Q6UXN2 200 aa14□□□□□ -0.17
SDC1-203ENST00000403076 TMEM144Q7Z5S9 345 aa14□□□□□ -0.17
SDC1-203ENST00000403076 CCDC140Q96MF4 163 aa14□□□□□ -0.17
SDC1-203ENST00000403076 CITED2Q99967 270 aaPredicted RBP14□□□□□ -0.17
SDC1-203ENST00000403076 GNB4Q9HAV0 340 aa14□□□□□ -0.17
SDC1-203ENST00000403076 FGF7P21781 194 aa14□□□□□ -0.17
SDC1-203ENST00000403076 CDX1P47902 265 aaPredicted RBP14□□□□□ -0.17
SDC1-203ENST00000403076 VWC2Q2TAL6 325 aa14□□□□□ -0.17
SDC1-203ENST00000403076 ZNF343Q6P1L6 599 aa14□□□□□ -0.17
SDC1-203ENST00000403076 TEPPQ6URK8 271 aa14□□□□□ -0.17
SDC1-203ENST00000403076 WFDC12Q8WWY7 111 aa14□□□□□ -0.17
SDC1-203ENST00000403076 ZNF471Q9BX82 626 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms