RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CHCHD1Q96BP2 118 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 VKORC1Q9BQB6 163 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 CST9LQ9H4G1 147 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 PRDM13Q9H4Q3 707 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 LINC00587B1AMM8 73 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 GNG5P63218 68 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 ZNF415Q09FC8 603 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 RNASE7Q9H1E1 156 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 ATXN8Q156A1 80 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 ZNF497Q6ZNH5 498 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 ADMP35318 185 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 LILRA1O75019 489 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 UMODP07911 640 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 WNT2P09544 360 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 NSUN5P1Q3KNT7 163 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 LINC01559Q495D7 138 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 PRR32B1ATL7 298 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 H3BUT2 72 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 M0R2P5 195 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 NAPSAO96009 420 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 LINC00271P0C7V0 271 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 CHCHD5Q9BSY4 110 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 CDKN1AP38936 164 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 PAX8Q06710 450 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 Q5BKY6 102 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 SNRNP200O75643 2136 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 EPOPA6NHQ4 379 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 GREM1O60565 184 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 LINC00158P58513 81 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 MORN2Q502X0 79 aa10.69□□□□□ -0.7
CCDC88C-204ENST00000389857 TRBV6-7A0A0A0MS04 114 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 NRN1Q9NPD7 142 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 RPL23P62829 140 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 ST6GALNAC3Q8NDV1 305 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 OSTCQ9NRP0 149 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 CELA3BP08861 270 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 GATA2P23769 480 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 RAMP1O60894 148 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 GNB1LQ9BYB4 327 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 PSG8Q9UQ74 426 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 A0A0G2JMM0 328 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 A0A1W2PPB8 328 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 A0A1W2PRS3 328 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 KIR3DP1A8MWS1 328 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 C9orf106Q8NAJ2 232 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 TMEM170AQ8WVE7 144 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 TNFRSF14Q92956 283 aa10.68□□□□□ -0.7
CCDC88C-204ENST00000389857 CD5P06127 495 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 SERF1AO75920 110 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 COL11A2P13942 1736 aaPredicted RBP10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 LAGE3Q14657 143 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 MS4A6AQ9H2W1 248 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 EVI2AP22794 236 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 TOMM40O96008 361 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 LHX2P50458 406 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 ERVK11-1P61568 191 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 GFI1BQ5VTD9 330 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 ANAPC13Q9BS18 74 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 OR9G9P0C7N8 305 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 FBLN7Q53RD9 439 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 ATP5L2Q7Z4Y8 100 aa10.67□□□□□ -0.7
CCDC88C-204ENST00000389857 FNDC4Q9H6D8 234 aaPredicted RBP10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 JPT2Q9H910 190 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 A0A1W2PRE2 83 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 TMEM238C9JI98 176 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 CCL3L1P16619 93 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 LAMTOR2Q9Y2Q5 125 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 LGALS1P09382 135 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 SMPXQ9UHP9 88 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 A8MWV9 139 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 PRCDQ00LT1 54 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 PLPPR1Q8TBJ4 325 aa10.66□□□□□ -0.7
CCDC88C-204ENST00000389857 OVOL2Q9BRP0 275 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 TRAV9-2A0A087WT02 112 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 IGKV1D-43A0A0B4J1Z2 117 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 FAM166AQ6J272 317 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 IGFBP3P17936 291 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 IFITM2Q01629 132 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 ERG28Q9UKR5 140 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 THSD7AQ9UPZ6 1657 aa10.65□□□□□ -0.7
CCDC88C-204ENST00000389857 ARHGEF17Q96PE2 2063 aaPredicted RBP10.65□□□□□ -0.71
CCDC88C-204ENST00000389857 RAMP3O60896 148 aa10.65□□□□□ -0.71
CCDC88C-204ENST00000389857 SLC25A28Q96A46 364 aa10.65□□□□□ -0.71
CCDC88C-204ENST00000389857 F8WEM9 126 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 RCHY1Q96PM5 261 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 ORAOV1Q8WV07 137 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 GSN-AS1Q9NRJ2 163 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 A0A087WX48 190 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 TRAV41A0A0B4J266 112 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 PSCAO43653 123 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 SAP30O75446 220 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 SVILO95425 2214 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 C3orf36Q3SXR2 165 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 GATD1Q8NB37 220 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 ESPL1Q14674 2120 aa10.64□□□□□ -0.71
CCDC88C-204ENST00000389857 TSKUQ8WUA8 353 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 IMMP1LQ96LU5 166 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 TAF1LQ8IZX4 1826 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms