RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CSPG4Q6UVK1 2322 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 TRAV20A0A0B4J274 112 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 RNF223E7ERA6 249 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 CDC34P49427 236 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-202ENST00000372405 RAB31Q13636 194 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 ZNF506Q5JVG8 444 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 NPIPB3Q92617 1050 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 SLC35E1Q96K37 410 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 SLC25A33Q9BSK2 321 aa10.91□□□□□ -0.66
PTPRF-202ENST00000372405 TMA7Q9Y2S6 64 aaKnown RBP10.91□□□□□ -0.66
PTPRF-202ENST00000372405 GCN1Q92616 2671 aaKnown RBP10.91□□□□□ -0.66
PTPRF-202ENST00000372405 IGHV3-21A0A0B4J1V1 117 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 IGHV7-81A0A0B4J1V7 117 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 LOC102723971A0A1B0GUV8 181 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 CYB5BO43169 146 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 DEFA5Q01523 94 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 LOXL1Q08397 574 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-202ENST00000372405 Q5PR19 223 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 LINC01356Q8N9X3 169 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 ABHD5Q8WTS1 349 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 WNT10AQ9GZT5 417 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 KCNIP2Q9NS61 270 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 ZFP92A6NM28 416 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 FBP1P09467 338 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 EGR2P11161 476 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-202ENST00000372405 RND2P52198 227 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 THAP8Q8NA92 274 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 RXFP4Q8TDU9 374 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 ARPC1AQ92747 370 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 HSPB9Q9BQS6 159 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 MEGF9Q9H1U4 602 aa10.9□□□□□ -0.66
PTPRF-202ENST00000372405 SEPSECSQ9HD40 501 aaKnown RBP10.9□□□□□ -0.66
PTPRF-202ENST00000372405 MT-CO2P00403 227 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 BCL2P10415 239 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 GATA3P23771 443 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 PMS2P11Q13670 270 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 SPATA31B1PQ5VZV4 182 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 GATAD1Q8WUU5 269 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 SLC35B3Q9H1N7 401 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 SMDT1Q9H4I9 107 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 PDZD2O15018 2839 aa10.89□□□□□ -0.67
PTPRF-202ENST00000372405 I3L2K1 104 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 HLA-DRB1P01911 266 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 SRP19P09132 144 aaKnown RBP10.88□□□□□ -0.67
PTPRF-202ENST00000372405 ZNF90Q03938 601 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 KHDC3LQ587J8 217 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 CYP2G1PQ6ZSU1 146 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 MBD6Q96DN6 1003 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 C1RLQ9NZP8 487 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 CREBBPQ92793 2442 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 PSMB11A5LHX3 300 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 CORTO00230 105 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 TMEM219Q86XT9 240 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 TMEM116Q8NCL8 245 aa10.88□□□□□ -0.67
PTPRF-202ENST00000372405 A0A1W2PPV4 95 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 TCRBV4S1A1TA0A5B7 111 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 SH2D7A6NKC9 451 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-202ENST00000372405 K7EIM0 57 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 HSPB1P04792 205 aaKnown RBP10.87□□□□□ -0.67
PTPRF-202ENST00000372405 STAG3L2P0CL84 134 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 STAG3L3P0CL85 134 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 IGHV4-31P0DP07 118 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 TMEM249Q2WGJ8 235 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 ETFRF1Q6IPR1 90 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 SVBPQ8N300 66 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 FANCD2OSQ96PS1 177 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 PRRC2AP48634 2157 aaKnown RBP10.87□□□□□ -0.67
PTPRF-202ENST00000372405 ITPR3Q14573 2671 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 ITPR2Q14571 2701 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 TEX15Q9BXT5 2789 aa10.87□□□□□ -0.67
PTPRF-202ENST00000372405 LINC01548A6NM66 108 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 NPIPB5A8MRT5 1133 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 TGFAP01135 160 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 C5orf56Q8N8D9 126 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 CYB561D1Q8N8Q1 229 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 TMEM37Q8WXS4 190 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 Q96MF0 132 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 RASL11BQ9BPW5 248 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 GSX1Q9H4S2 264 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-202ENST00000372405 AMY1AP04745 511 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 ARL14EPLP0DKL9 152 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 NPBWR1P48145 328 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 RHOBP62745 196 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 SLC35E3Q7Z769 313 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 TTC9CQ8N5M4 171 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 RBM14Q96PK6 669 aaKnown RBP10.86□□□□□ -0.67
PTPRF-202ENST00000372405 SSX3Q99909 188 aa10.86□□□□□ -0.67
PTPRF-202ENST00000372405 IGLV11-55A0A075B6I3 123 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 CD81P60033 236 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 FAM78BQ5VT40 261 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 MIR17HGQ75NE6 70 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 NKX6-2Q9C056 277 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-202ENST00000372405 VAX2Q9UIW0 290 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 UNC79Q9P2D8 2635 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 OR5G3P0C626 314 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 BTN1A1Q13410 526 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 MORN5Q5VZ52 161 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 PRSS57Q6UWY2 283 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 PATE2Q6UY27 113 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 SPNS3Q6ZMD2 512 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms