RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 AMMECR1LQ6DCA0 310 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 GPR82Q96P67 336 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 Q9H3A6 140 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 ZNF56Q15929 161 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 PRSS8Q16651 343 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 PVRIGQ6DKI7 326 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 BIVMQ86UB2 503 aa12.26□□□□□ -0.45
COL17A1-201ENST00000353479 A6NNC1 897 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 PCNX1Q96RV3 2341 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 BUB1B-PAK6H3BSN5 160 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 SUPT4H1P63272 117 aaKnown RBP12.25□□□□□ -0.45
COL17A1-201ENST00000353479 DENND4CQ5VZ89 1909 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 PLXND1Q9Y4D7 1925 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 ABCA4P78363 2273 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 NPIPB6E9PJ23 425 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 LRTM2Q8N967 370 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 TECTAO75443 2155 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 BDP1A6H8Y1 2624 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 SLC25A16P16260 332 aa12.25□□□□□ -0.45
COL17A1-201ENST00000353479 TRBV6-6A0A0A6YYG2 114 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 GGCTO75223 188 aaKnown RBP12.24□□□□□ -0.45
COL17A1-201ENST00000353479 TCTAP57738 103 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 KIAA1644Q3SXP7 199 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 ZNF600Q6ZNG1 722 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 TRAV3A0A0B4J244 114 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 MYOD1P15172 320 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 LINC00205P59089 165 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 NSUN5P1Q3KNT7 163 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 AP5S1Q9NUS5 200 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 TMEM155Q4W5P6 130 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 LINC00473A8K010 186 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 H0YJW9 148 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 CEACAM4O75871 244 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 TRGC1P0CF51 173 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 VN1R17PQ8TDU5 208 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 RNF223E7ERA6 249 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 SMAGPQ0VAQ4 97 aa12.24□□□□□ -0.45
COL17A1-201ENST00000353479 DOCK7Q96N67 2140 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 MPDZO75970 2070 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 C8orf46Q8TAG6 207 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 OOSP1A8MZH6 123 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 ASCL4Q6XD76 172 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 Q6ZR03 302 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 TBX15Q96SF7 602 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 MAP1LC3AQ9H492 121 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 KIAA2026Q5HYC2 2103 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 LINC01356Q8N9X3 169 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 ZNF383Q8NA42 475 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 MAPK1IP1LQ8NDC0 245 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 LHFPL5Q8TAF8 219 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 CDC42EP3Q9UKI2 254 aa12.23□□□□□ -0.45
COL17A1-201ENST00000353479 IGKV1-5P01602 117 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 PYYP10082 97 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 M0R381 172 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 NUDT3O95989 172 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 MEOX2P50222 304 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 GLMPQ8WWB7 406 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 ZNF257Q9Y2Q1 563 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 MUC21A0A0G2JKD1 596 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 MUC21A0A140T8X8 626 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 RNASE4P34096 147 aaKnown RBP12.22□□□□□ -0.45
COL17A1-201ENST00000353479 MUC21Q5SSG8 566 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 DUX3Q96PT4 197 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 SRIP30626 198 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 GNG5P63218 68 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 C15orf32Q32M92 178 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 C3orf36Q3SXR2 165 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 WFDC1Q9HC57 220 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 MBNL3Q9NUK0 354 aaKnown RBP12.22□□□□□ -0.45
COL17A1-201ENST00000353479 PSMB11A5LHX3 300 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 SLC17A3O00476 420 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 PAX8Q06710 450 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 GCSAMLQ5JQS6 135 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 LDLRAD2Q5SZI1 272 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 LHFPL4Q7Z7J7 247 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 OR1P1Q8NH06 330 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 FMC1Q96HJ9 113 aa12.22□□□□□ -0.45
COL17A1-201ENST00000353479 TRAV20A0A0B4J274 112 aa12.21□□□□□ -0.45
COL17A1-201ENST00000353479 VENTXO95231 258 aa12.21□□□□□ -0.45
COL17A1-201ENST00000353479 DLX1P56177 255 aa12.21□□□□□ -0.45
COL17A1-201ENST00000353479 KIR3DL3Q8N743 410 aa12.21□□□□□ -0.45
COL17A1-201ENST00000353479 DCAF16Q9NXF7 216 aa12.21□□□□□ -0.45
COL17A1-201ENST00000353479 SELENOKQ9Y6D0 94 aa12.21□□□□□ -0.45
COL17A1-201ENST00000353479 SRP19P09132 144 aaKnown RBP12.21□□□□□ -0.45
COL17A1-201ENST00000353479 ASIPP42127 132 aa12.21□□□□□ -0.46
COL17A1-201ENST00000353479 PRO3102Q9H379 93 aa12.21□□□□□ -0.46
COL17A1-201ENST00000353479 CXorf65A6NEN9 183 aa12.21□□□□□ -0.46
COL17A1-201ENST00000353479 DIRC3C9JPN6 131 aa12.21□□□□□ -0.46
COL17A1-201ENST00000353479 C5orf64Q2M2E5 130 aa12.21□□□□□ -0.46
COL17A1-201ENST00000353479 KLF17Q5JT82 389 aaPredicted RBP12.21□□□□□ -0.46
COL17A1-201ENST00000353479 J3QKU1 62 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 SAA4P35542 130 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 UQCRFS1P47985 274 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 ZNF502Q8TBZ5 544 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 HSPB9Q9BQS6 159 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 ZNF585BQ52M93 769 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 Q5PR19 223 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 RNF5Q99942 180 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 NDUFS8O00217 210 aa12.2□□□□□ -0.46
COL17A1-201ENST00000353479 HERPUD1Q15011 391 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms