RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ARL2-SNX15V9GYD0 113 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 IGHV2-26A0A0B4J1V2 119 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 IGLV1-47P01700 117 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 C8orf88P0DMB2 117 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 HIST1H1BP16401 226 aaKnown RBP12.42□□□□□ -0.42
UPF3B-202ENST00000345865 PATE2Q6UY27 113 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 MUC15Q8N387 334 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 C19orf24Q9BVV8 132 aa12.42□□□□□ -0.42
UPF3B-202ENST00000345865 RALYQ9UKM9 306 aaKnown RBP12.42□□□□□ -0.42
UPF3B-202ENST00000345865 TRAV20A0A0B4J274 112 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 HELTA6NFD8 242 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 MC5RP33032 325 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 MFAP2P55001 183 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 LGALS4P56470 323 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 SUMO1P63165 101 aaKnown RBP12.41□□□□□ -0.42
UPF3B-202ENST00000345865 CENPWQ5EE01 88 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 RNASEH2CQ8TDP1 164 aaKnown RBP12.41□□□□□ -0.42
UPF3B-202ENST00000345865 DNAJC4Q9NNZ3 241 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 TRAPPC1Q9Y5R8 145 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 LY96Q9Y6Y9 160 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 ABCA1O95477 2261 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 ARHGAP32A7KAX9 2087 aa12.41□□□□□ -0.42
UPF3B-202ENST00000345865 A0A1B0GUS0 222 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 IGLC7A0M8Q6 106 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 FRMD6-AS1P0C7T7 363 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 APELAP0DMC3 54 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 VMA21Q3ZAQ7 101 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 HCP5Q6MZN7 132 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 CHODLQ9H9P2 273 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 CA7P43166 264 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 CNN1P51911 297 aaKnown RBP12.4□□□□□ -0.42
UPF3B-202ENST00000345865 TAS2R45P59539 299 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 IL36BQ9NZH7 164 aa12.4□□□□□ -0.42
UPF3B-202ENST00000345865 ASH1LQ9NR48 2969 aaKnown RBP12.4□□□□□ -0.42
UPF3B-202ENST00000345865 FSTL3O95633 263 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 PYYP10082 97 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 LGALS7P47929 136 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 C9orf152Q5JTZ5 239 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 MSRB2Q9Y3D2 182 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 V9GYV3 84 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 A0A1W2PRE2 83 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 TCRBV4S1A1TA0A5B7 111 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 C22orf46C9J442 243 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 LY6HO94772 140 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 IGLV2-8P01709 118 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 CRYGBP07316 175 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 GNG4P50150 75 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 THAP8Q8NA92 274 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 OR5AU1Q8NGC0 362 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 PFDN5Q99471 154 aa12.39□□□□□ -0.43
UPF3B-202ENST00000345865 MRPL32Q9BYC8 188 aaKnown RBP12.39□□□□□ -0.43
UPF3B-202ENST00000345865 FBXL19-AS1Q494R0 122 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 RNASE7Q9H1E1 156 aaKnown RBP12.38□□□□□ -0.43
UPF3B-202ENST00000345865 ZNF355PQ9NSJ1 428 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 RAXQ9Y2V3 346 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 IGHV1-3A0A0C4DH29 117 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 BUB1B-PAK6H3BSN5 160 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 CCL21O00585 134 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 SNRPCP09234 159 aaKnown RBP12.38□□□□□ -0.43
UPF3B-202ENST00000345865 GZMBP10144 247 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 ADMP35318 185 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 SUB1P53999 127 aaKnown RBP eCLIP12.38□□□□□ -0.439e-7■■■□□ 17.7
UPF3B-202ENST00000345865 ERVFC1-1P60608 527 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 YPEL3P61236 119 aaPredicted RBP12.38□□□□□ -0.43
UPF3B-202ENST00000345865 UBE2L3P68036 154 aaKnown RBP12.38□□□□□ -0.43
UPF3B-202ENST00000345865 ZNF672Q499Z4 452 aaPredicted RBP12.38□□□□□ -0.43
UPF3B-202ENST00000345865 TEX45Q8NA69 505 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 LINC00479Q96M42 142 aa12.38□□□□□ -0.43
UPF3B-202ENST00000345865 NUPR1O60356 82 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 COX7A2P2O60397 106 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 CBLN1P23435 193 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 JOSD1Q15040 202 aaPredicted RBP12.37□□□□□ -0.43
UPF3B-202ENST00000345865 TNXAQ16473 311 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 LDLRAD2Q5SZI1 272 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 LHFPL4Q7Z7J7 247 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 TMEM256Q8N2U0 113 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 TNFRSF14Q92956 283 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 COL25A1Q9BXS0 654 aaPredicted RBP12.37□□□□□ -0.43
UPF3B-202ENST00000345865 SIGLEC9Q9Y336 463 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 IGHV3-21A0A0B4J1V1 117 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 PPIAL4CA0A0B4J2A2 164 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 MOSP00540 346 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 PPIAL4GP0DN37 164 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 COX7A1P24310 79 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 ASPHD1Q5U4P2 390 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 C10orf113Q5VZT2 155 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 PVRIGQ6DKI7 326 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 MISP3Q96FF7 219 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 BTF3L4Q96K17 158 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 IGF2BP2-AS1Q96M15 143 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 INSIG2Q9Y5U4 225 aa12.37□□□□□ -0.43
UPF3B-202ENST00000345865 CRYGCP07315 174 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 ADORA2A-AS1P86434 159 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 MMD2Q8IY49 270 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 CLEC7AQ9BXN2 247 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 SPTBN4Q9H254 2564 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 RPL27AP46776 148 aaKnown RBP12.36□□□□□ -0.43
UPF3B-202ENST00000345865 PRRX1P54821 245 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 CASP6P55212 293 aa12.36□□□□□ -0.43
UPF3B-202ENST00000345865 FXYD3Q14802 87 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms