RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 CDPF1Q6NVV7 123 aa11.95□□□□□ -0.5
CLCNKA-201ENST00000331433 PQLC2Q6ZP29 291 aa11.95□□□□□ -0.5
CLCNKA-201ENST00000331433 CLEC7AQ9BXN2 247 aa11.95□□□□□ -0.5
CLCNKA-201ENST00000331433 INSIG2Q9Y5U4 225 aa11.95□□□□□ -0.5
CLCNKA-201ENST00000331433 IGHV1-3A0A0C4DH29 117 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 IGLC7A0M8Q6 106 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 GGTLC3B5MD39 225 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 BUB1B-PAK6H3BSN5 160 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 TYMSP04818 313 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 PRRX1P54821 245 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 TNXAQ16473 311 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 PNKDQ8N490 385 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 PITPNC1Q9UKF7 332 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 IGKV1D-37A0A075B6S9 117 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 ZNF320A2RRD8 509 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 C8orf88P0DMB2 117 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 LGALS4P56470 323 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 TAS2R45P59539 299 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 ACTL10Q5JWF8 245 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 TNFRSF14Q92956 283 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 C19orf24Q9BVV8 132 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 SLC25A2Q9BXI2 301 aa11.94□□□□□ -0.5
CLCNKA-201ENST00000331433 CSMD1Q96PZ7 3565 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 MFAP2P55001 183 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 LCN2P80188 198 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 OR10G8Q8NGN5 311 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 MISP3Q96FF7 219 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 FAM167A-AS1Q96KT0 104 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 OR51M1Q9H341 326 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 DNAJC4Q9NNZ3 241 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 ONECUT1Q9UBC0 465 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 XKRY2A2RUG3 117 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 SLC17A3O00476 420 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 SUMO1P63165 101 aaKnown RBP11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 OR5I1Q13606 314 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 TEX45Q8NA69 505 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 OR5AU1Q8NGC0 362 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 EAF1Q96JC9 268 aaPredicted RBP11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 ARL2-SNX15V9GYD0 113 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 HIVEP3Q5T1R4 2406 aa11.93□□□□□ -0.5
CLCNKA-201ENST00000331433 ASH1LQ9NR48 2969 aaKnown RBP11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 IGHV3-21A0A0B4J1V1 117 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 LINC00587B1AMM8 73 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 C22orf46C9J442 243 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 C9JCJ5 164 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 COX7A2P2O60397 106 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 RPL27AP46776 148 aaKnown RBP11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 FOXL1Q12952 345 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 CENPWQ5EE01 88 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 PATE2Q6UY27 113 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 TMEM183AQ8IXX5 376 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 MMD2Q8IY49 270 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 OR8B3Q8NGG8 313 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 OR8B2Q96RD0 313 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 HIST1H2BLQ99880 126 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 TCRBV4S1A1TA0A5B7 111 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 HELTA6NFD8 242 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 MOSP00540 346 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 CRYGBP07316 175 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 PYYP10082 97 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 UBE2L3P68036 154 aaKnown RBP11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 BEND2Q8NDZ0 799 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 RPEQ96AT9 228 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 IMMP2LQ96T52 175 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 MRPL32Q9BYC8 188 aaKnown RBP11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 ZNF355PQ9NSJ1 428 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 SIGLEC9Q9Y336 463 aa11.92□□□□□ -0.5
CLCNKA-201ENST00000331433 SVEP1Q4LDE5 3571 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 SNRPCP09234 159 aaKnown RBP11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 OR1P1Q8NH06 330 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 CACNA1AO00555 2505 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 GNG4P50150 75 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 RPL15P61313 204 aaKnown RBP11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 LDLRAD2Q5SZI1 272 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 C10orf113Q5VZT2 155 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 THAP8Q8NA92 274 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 IGFBPL1Q8WX77 278 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 PACRGQ96M98 296 aaPredicted RBP11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 FBXL15Q9H469 300 aa11.91□□□□□ -0.5
CLCNKA-201ENST00000331433 COMPP49747 757 aaPredicted RBP11.9□□□□□ -0.5
CLCNKA-201ENST00000331433 LHFPL4Q7Z7J7 247 aa11.9□□□□□ -0.5
CLCNKA-201ENST00000331433 RAB1BQ9H0U4 201 aa11.9□□□□□ -0.5
CLCNKA-201ENST00000331433 MED13LQ71F56 2210 aa11.9□□□□□ -0.5
CLCNKA-201ENST00000331433 A0A1W2PRE2 83 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 FSTL3O95633 263 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 RD3LP0DJH9 198 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 PPP1R27Q86WC6 154 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 C8orf46Q8TAG6 207 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 TRAPPC1Q9Y5R8 145 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 LIPFP07098 398 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 ERVFC1-1P60608 527 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 ARF6P62330 175 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 PFDN5Q99471 154 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 TNFRSF19Q9NS68 423 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 LY96Q9Y6Y9 160 aa11.89□□□□□ -0.51
CLCNKA-201ENST00000331433 FCN1O00602 326 aa11.88□□□□□ -0.51
CLCNKA-201ENST00000331433 RBP4P02753 201 aa11.88□□□□□ -0.51
CLCNKA-201ENST00000331433 BPIFB3P59826 476 aa11.88□□□□□ -0.51
CLCNKA-201ENST00000331433 OR1L4Q8NGR5 311 aa11.88□□□□□ -0.51
CLCNKA-201ENST00000331433 RNF2Q99496 336 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms