RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 GCHFRP30047 84 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 PCP2Q8IVA1 136 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 MYH14Q7Z406 1995 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 F5H768 121 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 RHODO00212 210 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 IL18BPO95998 194 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 PPYP01298 95 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 COX6A1P12074 109 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 CXCL2P19875 107 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 FOXC1Q12948 553 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 ZNF493Q6ZR52 646 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 SLC25A48Q6ZT89 311 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 SMIM14Q96QK8 99 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 CMC2Q9NRP2 79 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 PRSS38A1L453 326 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 CA11O75493 328 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 CGAP01215 116 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 NREPQ16612 68 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 FAM78AQ5JUQ0 283 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 CXCL16Q9H2A7 254 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 PDFQ9HBH1 243 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 JPT1Q9UK76 154 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 K7ERJ3 54 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 ZG16O60844 167 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 CD300LDQ6UXZ3 194 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 ZFP2Q6ZN57 461 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 LINC01549A6NIU2 74 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 SOCS1O15524 211 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 CTSBP07858 339 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 PATE4P0C8F1 98 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 DUSP23Q9BVJ7 150 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 DLEC1Q9Y238 1755 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 EREGO14944 169 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 MYOD1P15172 320 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 PAX1P15863 534 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 IGHV1-2P23083 117 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 MSRB3Q8IXL7 192 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 FGF16O43320 207 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 TMEM52BQ4KMG9 183 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 LTN1O94822 1766 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 CLDN14O95500 239 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 CRYGBP07316 175 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 IRF3Q14653 427 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 WDR38Q5JTN6 314 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 FAM219BQ5XKK7 198 aa6.41□□□□□ -1.38
LIMCH1-201ENST00000313860 LRCOL1A6NCL2 159 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 DEFB112Q30KQ8 113 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 PIGYQ3MUY2 71 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 VSIG2Q96IQ7 327 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 PRR30Q53SZ7 412 aaPredicted RBP6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 FMC1Q96HJ9 113 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 DIP2BQ9P265 1576 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 TMEM178BH3BS89 294 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 TGFBR3LH3BV60 316 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 PRR7Q8TB68 274 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 B9D1Q9UPM9 204 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 CAMTA1Q9Y6Y1 1673 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 SCN11AQ9UI33 1791 aa6.4□□□□□ -1.38
LIMCH1-201ENST00000313860 LRP5O75197 1615 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 RPS19BP1Q86WX3 136 aaKnown RBP6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 DCCP43146 1447 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 RGPD2P0DJD1 1756 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 CDIPTO14735 213 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 CRYGDP07320 174 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 DEFB125Q8N687 156 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 GLI3P10071 1580 aa6.4□□□□□ -1.39
LIMCH1-201ENST00000313860 A0A1W2PPV9 198 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 PRSS29PA6NIE9 313 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 K7EN84 100 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 K7EP34 96 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 TRGV3P03979 118 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 CXCL1P09341 107 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 MAVSQ7Z434 540 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 FXYD5Q96DB9 178 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 C4orf45Q96LM5 186 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 RICTORQ6R327 1708 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 SMIM26A0A096LP01 95 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 TRAV13-2A0A0B4J235 113 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 IGHV2OR16-5A0A0B4J2B6 119 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 TEX49A0A1B0GTD5 131 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 C15orf61A6NNL5 157 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 M0QXV9 152 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 FGF12P61328 243 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 FKBP1AP62942 108 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 RPL36AP83881 106 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 C4orf48Q5BLP8 95 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 RPL36ALQ969Q0 106 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 CSTL1Q9H114 145 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 SIT1Q9Y3P8 196 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 RGPD8O14715 1765 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 IGHV1OR15-9A0A0B4J2B8 117 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 C9orf118A6NHY6 69 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 FGF9P31371 208 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 LILRA6Q6PI73 481 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 AMTNQ6UX39 209 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 RFLNAQ6ZTI6 216 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 NPWQ8N729 165 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 LINC00479Q96M42 142 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 FOXD3Q9UJU5 478 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 ATP5G3P48201 142 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms