RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MS4A6AQ9H2W1 248 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 A0A1B0GV72 72 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 C15orf62A8K5M9 175 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 PSPNO60542 156 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 MBNL2Q5VZF2 373 aaKnown RBP16.04■□□□□ 0.16
USP48-201ENST00000308271 SAA1P0DJI8 122 aaPredicted RBP16.04■□□□□ 0.16
USP48-201ENST00000308271 FOXG1P55316 489 aaPredicted RBP16.04■□□□□ 0.16
USP48-201ENST00000308271 SEC11AP67812 179 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 ZNF726P1Q15940 193 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 BMPERQ8N8U9 685 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 DEFB124Q8NES8 71 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 Q9H3A6 140 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 C19orf67A6NJJ6 358 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 H3BUT2 72 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 Q6P435 159 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 CIARTQ8N365 385 aaPredicted RBP16.04■□□□□ 0.16
USP48-201ENST00000308271 MTURNQ8N3F0 131 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 JKAMPQ9P055 326 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 PYYP10082 97 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 TSPOP30536 169 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 C20orf204Q6ZNR8 217 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 ORMDL3Q8N138 153 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 NEUROG1Q92886 237 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 DOCK9Q9BZ29 2069 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 DOCK11Q5JSL3 2073 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 IGHV2OR16-5A0A0B4J2B6 119 aa16.03■□□□□ 0.16
USP48-201ENST00000308271 RELQ04864 619 aaPredicted RBP16.03■□□□□ 0.16
USP48-201ENST00000308271 M0QZ24 198 aa16.02■□□□□ 0.16
USP48-201ENST00000308271 GNG5P63218 68 aa16.02■□□□□ 0.16
USP48-201ENST00000308271 NUDT10Q8NFP7 164 aa16.02■□□□□ 0.16
USP48-201ENST00000308271 NUDT11Q96G61 164 aa16.02■□□□□ 0.16
USP48-201ENST00000308271 IGHV1-69-2A0A0G2JMI3 117 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 OR4X2Q8NGF9 303 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 TCRBV4S1A1TA0A5B7 111 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 IL4P05112 153 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 TTC9CQ8N5M4 171 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 PRR7Q8TB68 274 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 ZNF257Q9Y2Q1 563 aa16.02■□□□□ 0.15
USP48-201ENST00000308271 LILRA1O75019 489 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 NTF4P34130 210 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 LCN12Q6JVE5 192 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 MRPL20Q9BYC9 149 aaKnown RBP16.01■□□□□ 0.15
USP48-201ENST00000308271 OTORQ9NRC9 128 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 FOXA2Q9Y261 457 aaPredicted RBP16.01■□□□□ 0.15
USP48-201ENST00000308271 PLXNB3Q9ULL4 1909 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 LYPD6Q86Y78 171 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 M0R3E3 92 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 TIMM23BQ5SRD1 257 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 FAM216BQ8N7L0 139 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 MRPS16Q9Y3D3 137 aaKnown RBP16.01■□□□□ 0.15
USP48-201ENST00000308271 J3KRW8 73 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 MEF2CQ06413 473 aaPredicted RBP16.01■□□□□ 0.15
USP48-201ENST00000308271 TEX45Q8NA69 505 aa16.01■□□□□ 0.15
USP48-201ENST00000308271 OR11H12B2RN74 326 aa16■□□□□ 0.15
USP48-201ENST00000308271 YPEL3P61236 119 aaPredicted RBP16■□□□□ 0.15
USP48-201ENST00000308271 FOXC1Q12948 553 aa16■□□□□ 0.15
USP48-201ENST00000308271 FAM201AQ5SY85 155 aa16■□□□□ 0.15
USP48-201ENST00000308271 CDPF1Q6NVV7 123 aa16■□□□□ 0.15
USP48-201ENST00000308271 OR11H1Q8NG94 326 aa16■□□□□ 0.15
USP48-201ENST00000308271 OR11H2Q8NH07 326 aa16■□□□□ 0.15
USP48-201ENST00000308271 C18orf15Q96N68 181 aa16■□□□□ 0.15
USP48-201ENST00000308271 FOXI3A8MTJ6 420 aaPredicted RBP16■□□□□ 0.15
USP48-201ENST00000308271 GFRA3O60609 400 aa16■□□□□ 0.15
USP48-201ENST00000308271 AMMECR1LQ6DCA0 310 aa16■□□□□ 0.15
USP48-201ENST00000308271 LINC00312Q9Y6C7 94 aa16■□□□□ 0.15
USP48-201ENST00000308271 A0A1B0GUS0 222 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 IGLV3-1P01715 115 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 OR2K2Q8NGT1 345 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 SHANK1Q9Y566 2161 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 PINLYPA6NC86 204 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 ATP5LO75964 103 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 GAGE1Q13065 139 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 COA6Q5JTJ3 125 aaKnown RBP15.99■□□□□ 0.15
USP48-201ENST00000308271 OR5A1Q8NGJ0 315 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 OR1N2Q8NGR9 330 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 RABAC1Q9UI14 185 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 NKX2-8O15522 239 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 TFF1P04155 84 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 FNDC4Q9H6D8 234 aaPredicted RBP15.99■□□□□ 0.15
USP48-201ENST00000308271 PLA2G2EQ9NZK7 142 aa15.99■□□□□ 0.15
USP48-201ENST00000308271 LINC00473A8K010 186 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 GFRA1P56159 465 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 COLCA1Q6ZS62 124 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 TRBV20OR9-2A0A075B6H5 130 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 TRAV8-6A0A0B4J262 113 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 FOXH1O75593 365 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 RAB9AP51151 201 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 HS3ST6Q96QI5 342 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 HILPDAQ9Y5L2 63 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 CLEC7AQ9BXN2 247 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 TMEM160Q9NX00 188 aa15.98■□□□□ 0.15
USP48-201ENST00000308271 MBNL3Q9NUK0 354 aaKnown RBP15.97■□□□□ 0.15
USP48-201ENST00000308271 FAM90A27PA6NNH2 459 aa15.97■□□□□ 0.15
USP48-201ENST00000308271 ECSCRQ19T08 205 aa15.97■□□□□ 0.15
USP48-201ENST00000308271 CRIM1Q9NZV1 1036 aa15.97■□□□□ 0.15
USP48-201ENST00000308271 CDKN1AP38936 164 aa15.97■□□□□ 0.15
USP48-201ENST00000308271 MPV17L2Q567V2 206 aa15.97■□□□□ 0.15
USP48-201ENST00000308271 RSPO1Q2MKA7 263 aaPredicted RBP15.97■□□□□ 0.15
USP48-201ENST00000308271 COX11Q9Y6N1 276 aa15.97■□□□□ 0.15
USP48-201ENST00000308271 B3GALT5-AS1P59052 145 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms