RNA–Protein interactions for RNA: ENST00000291300.8

HIF3A-203, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-203ENST00000291300 KRTAP10-9P60411 292 aa13.27□□□□□ -0.29
HIF3A-203ENST00000291300 C5orf64Q2M2E5 130 aa13.27□□□□□ -0.29
HIF3A-203ENST00000291300 FAM78BQ5VT40 261 aa13.27□□□□□ -0.29
HIF3A-203ENST00000291300 CLEC2AQ6UVW9 174 aa13.27□□□□□ -0.29
HIF3A-203ENST00000291300 RBMS3Q6XE24 437 aaKnown RBP13.27□□□□□ -0.29
HIF3A-203ENST00000291300 OR2T10Q8NGZ9 312 aa13.27□□□□□ -0.29
HIF3A-203ENST00000291300 ISOC2Q96AB3 205 aa13.27□□□□□ -0.29
HIF3A-203ENST00000291300 POLR3KQ9Y2Y1 108 aaPredicted RBP13.27□□□□□ -0.29
HIF3A-203ENST00000291300 F11RQ9Y624 299 aaKnown RBP13.27□□□□□ -0.29
HIF3A-203ENST00000291300 CHD6Q8TD26 2715 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 NCBP2LA6PVI3 153 aaKnown RBP13.26□□□□□ -0.29
HIF3A-203ENST00000291300 IFNA1P01562 189 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 PSMB3P49720 205 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 PAX8Q06710 450 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 CYP2G1PQ6ZSU1 146 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 OR4F5Q8NH21 305 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 OR4F4Q96R69 305 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 KCNIP2Q9NS61 270 aa13.26□□□□□ -0.29
HIF3A-203ENST00000291300 SOX21Q9Y651 276 aaPredicted RBP13.26□□□□□ -0.29
HIF3A-203ENST00000291300 PSMB11A5LHX3 300 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 COX6B1P14854 86 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 FXYD3Q14802 87 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 KLF17Q5JT82 389 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-203ENST00000291300 CCDC144NLQ6NUI1 221 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 OR51G1Q8NGK1 321 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 OR1P1Q8NH06 330 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 ZNF503Q96F45 646 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 DOK5Q9P104 306 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 ZNF727A8MUV8 499 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 MT-CO2P00403 227 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 RHOBP62745 196 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 EBI3Q14213 229 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 ASPHD1Q5U4P2 390 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 WNT10AQ9GZT5 417 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 MANBALQ9NQG1 85 aa13.25□□□□□ -0.29
HIF3A-203ENST00000291300 USP9YO00507 2555 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-203ENST00000291300 ANKRD17O75179 2603 aaKnown RBP13.25□□□□□ -0.29
HIF3A-203ENST00000291300 PTPN13Q12923 2485 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 TRAV5A0A0B4J249 113 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 OOSP1A8MZH6 123 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 NPFFO15130 113 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 TMEM11P17152 192 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 THAP8Q8NA92 274 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 RPUSD4Q96CM3 377 aaKnown RBP13.24□□□□□ -0.29
HIF3A-203ENST00000291300 TBL2Q9Y4P3 447 aaKnown RBP13.24□□□□□ -0.29
HIF3A-203ENST00000291300 YTHDF2Q9Y5A9 579 aaKnown RBP13.24□□□□□ -0.29
HIF3A-203ENST00000291300 CXorf1O96002 111 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 GCHFRP30047 84 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 CX3CL1P78423 397 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 ZNF674Q2M3X9 581 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 TMEM249Q2WGJ8 235 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 PATE2Q6UY27 113 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 BRD3OSQ6XYD6 125 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 MALSU1Q96EH3 234 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 FUT9Q9Y231 359 aa13.24□□□□□ -0.29
HIF3A-203ENST00000291300 TCRBV4S1A1TA0A5B7 111 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 COLCA2A8K830 154 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 C11orf94C9JXX5 98 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 NDUFS8O00217 210 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 CTRB1P17538 263 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 ATF4P18848 351 aaPredicted RBP13.23□□□□□ -0.29
HIF3A-203ENST00000291300 CST9LP1Q5W188 147 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 CTRB2Q6GPI1 263 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 UHRF2Q96PU4 802 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 NIPSNAP3BQ9BS92 247 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 NBPF19A0A087WUL8 3843 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 ABCA12Q86UK0 2595 aa13.23□□□□□ -0.29
HIF3A-203ENST00000291300 I3L2K1 104 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 TVP23CQ96ET8 276 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 S4R3C0 116 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 TENM4Q6N022 2769 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 SH2D7A6NKC9 451 aaPredicted RBP13.22□□□□□ -0.29
HIF3A-203ENST00000291300 OR5G3P0C626 314 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 TAGLN2P37802 199 aaKnown RBP13.22□□□□□ -0.29
HIF3A-203ENST00000291300 RHEBQ15382 184 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 Q8N9W7 124 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 DERL1Q9BUN8 251 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 PARLQ9H300 379 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 SMCO4Q9NRQ5 59 aa13.22□□□□□ -0.29
HIF3A-203ENST00000291300 IGHV4-38-2P0DP08 117 aa13.21□□□□□ -0.29
HIF3A-203ENST00000291300 EGR2P11161 476 aaPredicted RBP13.21□□□□□ -0.29
HIF3A-203ENST00000291300 MRPL41Q8IXM3 137 aaKnown RBP13.21□□□□□ -0.29
HIF3A-203ENST00000291300 TNFRSF19Q9NS68 423 aa13.21□□□□□ -0.29
HIF3A-203ENST00000291300 TRAV40A0A0B4J280 105 aa13.21□□□□□ -0.3
HIF3A-203ENST00000291300 LOC105371267A0A1B0GV96 52 aa13.21□□□□□ -0.3
HIF3A-203ENST00000291300 TMEM116Q8NCL8 245 aa13.21□□□□□ -0.3
HIF3A-203ENST00000291300 SMIM7Q9BQ49 75 aa13.21□□□□□ -0.3
HIF3A-203ENST00000291300 HSPB9Q9BQS6 159 aa13.21□□□□□ -0.3
HIF3A-203ENST00000291300 SDF2L1Q9HCN8 221 aa13.21□□□□□ -0.3
HIF3A-203ENST00000291300 KMT2BQ9UMN6 2715 aaPredicted RBP13.21□□□□□ -0.3
HIF3A-203ENST00000291300 K7EIM0 57 aa13.2□□□□□ -0.3
HIF3A-203ENST00000291300 OR10J4P0C629 311 aa13.2□□□□□ -0.3
HIF3A-203ENST00000291300 ZNF562Q6V9R5 426 aa13.2□□□□□ -0.3
HIF3A-203ENST00000291300 OR4X1Q8NH49 305 aa13.2□□□□□ -0.3
HIF3A-203ENST00000291300 ARPC1AQ92747 370 aa13.2□□□□□ -0.3
HIF3A-203ENST00000291300 FAM167A-AS1Q96KT0 104 aa13.2□□□□□ -0.3
HIF3A-203ENST00000291300 IGHV7-81A0A0B4J1V7 117 aa13.19□□□□□ -0.3
HIF3A-203ENST00000291300 AVPP01185 164 aa13.19□□□□□ -0.3
HIF3A-203ENST00000291300 CLEC12BQ2HXU8 276 aa13.19□□□□□ -0.3
HIF3A-203ENST00000291300 MAPK1IP1LQ8NDC0 245 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms