RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 A0A1B0GV90 55 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 SERF1AO75920 110 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 FAM166AQ6J272 317 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 FAM71F2Q6NXP2 309 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 COLCA1Q6ZS62 124 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 MBD3L1Q8WWY6 194 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 NEUROG3Q9Y4Z2 214 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 ARHGEF17Q96PE2 2063 aaPredicted RBP11.28□□□□□ -0.6
SF3A1-201ENST00000215793 TRAV21A0A0B4J279 112 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 OR9G9P0C7N8 305 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 C1QTNF9P0C862 333 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 CNTFRP26992 372 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 RHOGP84095 191 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 OR10J3Q5JRS4 329 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 NUDT11Q96G61 164 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 ROS1P08922 2347 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 A0A1B0GWB2 263 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 THBDP07204 575 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 CD55P08174 381 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 EFNB3Q15768 340 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 NXT2Q9NPJ8 142 aaKnown RBP11.27□□□□□ -0.6
SF3A1-201ENST00000215793 PSG8Q9UQ74 426 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 RBBP6Q7Z6E9 1792 aaKnown RBP11.27□□□□□ -0.6
SF3A1-201ENST00000215793 SRRM5B3KS81 715 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 TMEM167AQ8TBQ9 72 aa11.27□□□□□ -0.6
SF3A1-201ENST00000215793 RPUSD1Q9UJJ7 312 aaKnown RBP11.27□□□□□ -0.6
SF3A1-201ENST00000215793 MTCL1Q9Y4B5 1905 aaKnown RBP11.27□□□□□ -0.61
SF3A1-201ENST00000215793 NAPSAO96009 420 aa11.27□□□□□ -0.61
SF3A1-201ENST00000215793 NIT1Q86X76 327 aa11.27□□□□□ -0.61
SF3A1-201ENST00000215793 LEPP41159 167 aa11.27□□□□□ -0.61
SF3A1-201ENST00000215793 ST20Q9HBF5 79 aa11.27□□□□□ -0.61
SF3A1-201ENST00000215793 TOMM7Q9P0U1 55 aa11.27□□□□□ -0.61
SF3A1-201ENST00000215793 ZNF257Q9Y2Q1 563 aa11.27□□□□□ -0.61
SF3A1-201ENST00000215793 A0A087WV48 116 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 SNAI2O43623 268 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 CD7P09564 240 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 IFI27P40305 119 aaPredicted RBP11.26□□□□□ -0.61
SF3A1-201ENST00000215793 GNG5P63218 68 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 VCX2Q9H322 139 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 GSN-AS1Q9NRJ2 163 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 GHRHP01286 108 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 TIMP3P35625 211 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 SPRR3Q9UBC9 169 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 A0A0A6YYD4 124 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 IGHV1-46P01743 117 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 HBDP02042 147 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 IGKV1D-8A0A087WSZ0 117 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 APOMO95445 188 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 TSPAN13O95857 204 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 PYYP10082 97 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 MST1P26927 711 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 LHFPL1Q86WI0 220 aa11.26□□□□□ -0.61
SF3A1-201ENST00000215793 IGKV1-12A0A0C4DH73 117 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 TIMM23O14925 209 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 IGKV1D-12P01611 117 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 CACNG7P62955 275 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 LDLRAD2Q5SZI1 272 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 ZCCHC24Q8N2G6 241 aaKnown RBP11.25□□□□□ -0.61
SF3A1-201ENST00000215793 JMJD8Q96S16 334 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 GFI1Q99684 422 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 IL18BPO95998 194 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 SRSF1Q07955 248 aaKnown RBP eCLIP11.25□□□□□ -0.61
SF3A1-201ENST00000215793 ST6GALNAC6Q969X2 333 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 SPCS1Q9Y6A9 102 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 PINLYPA6NC86 204 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 GAS1P54826 345 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 OCC1Q8TAD7 63 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 C5orf30Q96GV9 206 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 CFAP161Q6P656 301 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 TEX38Q6PEX7 206 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 C10orf126Q8N4M7 172 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 C8orf46Q8TAG6 207 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 FGFBP3Q8TAT2 258 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 GNB1LQ9BYB4 327 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
SF3A1-201ENST00000215793 LINC01549A6NIU2 74 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 ORMDL2Q53FV1 153 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 LAMTOR2Q9Y2Q5 125 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 TRBV7-9A0A0J9YWB2 115 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 RBMY1BA6NDE4 496 aaKnown RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 RBMY1EA6NEQ0 496 aaKnown RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 F2Z2F3 143 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 EFNA2O43921 213 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 NDUFA3O95167 84 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 RBMY1DP0C7P1 496 aaKnown RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 LINC00614P0C842 121 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 RBMY1A1P0DJD3 496 aaKnown RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 RBMY1CP0DJD4 496 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 VDAC2P45880 294 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 HEPN1Q6WQI6 88 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 PLSCR4Q9NRQ2 329 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 GGNQ86UU5 652 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 C17orf82Q86X59 251 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 STHQ8IWL8 128 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 NABP1Q96AH0 204 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 TMEM242Q9NWH2 141 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 SPTAN1Q13813 2472 aaKnown RBP11.24□□□□□ -0.61
SF3A1-201ENST00000215793 ST6GALNAC3Q8NDV1 305 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 TSKUQ8WUA8 353 aa11.24□□□□□ -0.61
SF3A1-201ENST00000215793 TDGF1P13385 188 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms