RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAM90A10PA6NDY2 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A18PA6NE21 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A16PA6NEW6 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A20PA6NIJ5 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A8PA6NJQ4 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A7PA6NKC0 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A22PA8MWA6 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A12PA8MX19 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A5PA8MXJ8 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A23PA8MXZ1 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A15PP0C7V4 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A13PP0C7W8 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A14PP0C7W9 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM90A24PP0C7X0 464 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PSG2P11465 335 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PI3P19957 117 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ZFP36P26651 326 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 POLR2IP36954 125 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 GLIPR1P48060 266 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PAX8Q06710 450 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 MEIG1Q5JSS6 88 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 VAX1Q5SQQ9 334 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 TEPPQ6URK8 271 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OR10AC1Q8NH08 325 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 KCNE5Q9UJ90 142 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 SIPA1L1O43166 1804 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 TRAV1-2A0A0B4J238 106 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 A0A1B0GWB2 263 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 CST4P01036 141 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 HLA-DQA1P01909 254 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 TCRBP04435 133 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 CDC34P49427 236 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PRSS54Q6PEW0 395 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 SELENOHQ8IZQ5 122 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF645Q8N7E2 425 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 TMEM272A0A1B0GTI8 110 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 LINC01619G3V211 115 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 CFAP161Q6P656 301 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 BAP18Q8IXM2 172 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OR10G8Q8NGN5 311 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OR5H6Q8NGV6 325 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 WDR89Q96FK6 387 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 RCC1LQ96I51 464 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 MRM2Q9UI43 246 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 MSGN1A6NI15 193 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 UPK2O00526 184 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ATP5LO75964 103 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OR9G9P0C7N8 305 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 WT1P19544 449 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 UBE2E1P51965 193 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 KLF17Q5JT82 389 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FAM78BQ5VT40 261 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 MBNL2Q5VZF2 373 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OR10W1Q8NGF6 305 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 RNF183Q96D59 192 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 UQCR10Q9UDW1 63 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OGG1O15527 345 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 BCL2L11O43521 198 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 RAMP3O60896 148 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ZFPL1O95159 310 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PPYP01298 95 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 CD1AP06126 327 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 RNASE1P07998 156 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 CCL3L1P16619 93 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 GPX4P36969 197 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 POU2AF1Q16633 256 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 FGF20Q9NP95 211 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PEF1Q9UBV8 284 aaKnown RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 OPN4Q9UHM6 478 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 VPREB3Q9UKI3 123 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 CYSLTR1Q9Y271 337 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 TNFRSF18Q9Y5U5 241 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.19□□□□□ -1.74
SCN1A-218ENST00000640036 HMX2A2RU54 273 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 F5H768 121 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 H3BQ85 93 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 SIGLEC5O15389 551 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 MRPL54Q6P161 138 aaKnown RBP4.19□□□□□ -1.74
SCN1A-218ENST00000640036 PAQR4Q8N4S7 273 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-218ENST00000640036 CLPSL1A2RUU4 121 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 DPM2O94777 84 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 APCSP02743 223 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 SMIM18P0DKX4 95 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 COL8A2P25067 703 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 IFITM2Q01629 132 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 SURF2Q15527 256 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-218ENST00000640036 LCN15Q6UWW0 184 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 OR5P3Q8WZ94 311 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 DLX4Q92988 240 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-218ENST00000640036 NABP1Q96AH0 204 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 NEU1Q99519 415 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 LINC00527Q9UJ94 153 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 TNFSF18Q9UNG2 199 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 IGHV3OR16-13A0A075B7E8 117 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 IGHV3-74A0A0B4J1X5 117 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 MPTX1A8MV57 137 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 GGTLC3B5MD39 225 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 CD24P25063 80 aa4.19□□□□□ -1.74
SCN1A-218ENST00000640036 SNAI3Q3KNW1 292 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms