RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 OR13A1Q8NGR1 328 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 C10orf35Q96D05 121 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 SPRY1O43609 319 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 RPL7P18124 248 aaKnown RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 PSG7Q13046 419 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 UBR3Q6ZT12 1888 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 RP1L1Q8IWN7 2480 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 ZDHHC23Q8IYP9 409 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TMEFF1Q8IYR6 380 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 RPEQ96AT9 228 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 RNF125Q96EQ8 232 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 LINC00312Q9Y6C7 94 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 KIF26BQ2KJY2 2108 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 DOCK3Q8IZD9 2030 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TRIP12Q14669 1992 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 IGKV1D-33P01593 117 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 IGKV1-33P01594 117 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 P01737 135 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TNFRSF1AP19438 455 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 CTGFP29279 349 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 SEC61GP60059 68 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 RIGQ13278 110 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 Q1RN00 199 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 RRN3P1Q2M238 152 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM78Q5T7P6 136 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 LINC01545Q5VT33 79 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF818PQ6ZRF7 136 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 LCNL1Q6ZST4 164 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 C2orf91Q6ZV80 131 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 FAM19A5Q7Z5A7 132 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 MOGAT3Q86VF5 341 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 OR5AS1Q8N127 324 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 OR1L4Q8NGR5 311 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM101Q96IK0 257 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 XIRP1Q702N8 1843 aaKnown RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TRIOBPQ9H2D6 2365 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TDRD6O60522 2096 aaKnown RBP4.78□□□□□ -1.65
SCN1A-216ENST00000637968 PGLYRP1O75594 196 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 ORM1P02763 201 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 LINC00694P0DN24 101 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 NPPCP23582 126 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 IGFBP6P24592 240 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 INSL3P51460 131 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 ZXDAP98168 799 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 HHEXQ03014 270 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF816Q0VGE8 651 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 MORN3Q6PF18 240 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 PIGCQ92535 297 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 RNF166Q96A37 237 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 Q96M66 194 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 IGLV1-36A0A0B4J1U3 117 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 HIGD1CA8MV81 97 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 CRXO43186 299 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 ERVK-16P61578 105 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 SCGB1D4Q6XE38 83 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 CEND1Q8N111 149 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 KIR3DL3Q8N743 410 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 C15orf53Q8NAA6 179 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 C8orf46Q8TAG6 207 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 DUX3Q96PT4 197 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 TMUB1Q9BVT8 246 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 MPC1Q9Y5U8 109 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 GREB1LQ9C091 1923 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 NRXN2Q9P2S2 1712 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 E9PLD3 99 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 IGHG1P01857 330 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 TSACCQ96A04 125 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-216ENST00000637968 GPHA2Q96T91 129 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 KIR2DL4Q99706 377 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 PTPRDP23468 1912 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 TMED7-TICAM2A0A0A6YYA0 188 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 HSPB6O14558 160 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 DHRS3O75911 302 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 P04436 131 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 ARL16Q0P5N6 197 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 TWIST1Q15672 202 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 C12orf74Q32Q52 190 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 TMEM155Q4W5P6 130 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 LINC00114Q6XXX2 140 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 ZAR1Q86SH2 424 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 SLC25A2Q9BXI2 301 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 SIGLEC9Q9Y336 463 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 LOXL2Q9Y4K0 774 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 COL4A1P02462 1669 aa4.77□□□□□ -1.65
SCN1A-216ENST00000637968 SIP14410 1827 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 BRWD3Q6RI45 1802 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 KNTC1P50748 2209 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 FXYD2P54710 66 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF542PQ5EBM4 170 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 WIPF2Q8TF74 440 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-216ENST00000637968 SSMEM1Q8WWF3 244 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 DDB2Q92466 427 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 PGLYRP4Q96LB8 373 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 ANK1P16157 1881 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LOC101059948A0A1B0GTJ6 334 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 SMIM27A0A1W2PRY6 76 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 VWC2LB2RUY7 222 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 OR2J3O76001 311 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms